KEGG   Tupaia chinensis (Chinese tree shrew): 102487728Help
Entry
102487728         CDS       T02978                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup05034  Alcoholism
tup05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:tup00001]
 09160 Human Diseases
  09161 Cancers: Overview
   05203 Viral carcinogenesis
    102487728 (HDAC6)
  09165 Substance dependence
   05034 Alcoholism
    102487728 (HDAC6)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tup01009]
    102487728 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tup03019]
    102487728 (HDAC6)
   04131 Membrane trafficking [BR:tup04131]
    102487728 (HDAC6)
   03036 Chromosome and associated proteins [BR:tup03036]
    102487728 (HDAC6)
Enzymes [BR:tup01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102487728 (HDAC6)
Protein phosphatases and associated proteins [BR:tup01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102487728 (HDAC6)
Messenger RNA biogenesis [BR:tup03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     102487728 (HDAC6)
Membrane trafficking [BR:tup04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    102487728 (HDAC6)
Chromosome and associated proteins [BR:tup03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     102487728 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 102487728
NCBI-ProteinID: XP_006171993
LinkDB All DBs
Position
Un
AA seq 1241 aa AA seqDB search
MTSTGQDATTTRQRRNRHSPQLPPHDSSVTSKRSVKKGTGPRTAHSLAELKKKGKMKKLS
QAASEEDLVMGLQGLDLNLEAKALAGTGLVLDEQLNEFHCLWDDSFPESPQRFHAIKEQL
IQEGLLDRCVSFPARFAEKEELMLVHSLEFIDLMETTQYMSEEELRVLADTYDSVYLHPN
SYTCACLASGSVLRLVDAVLGAEIRNGMAIVRPPGHHAQHSLMDGYCMFNHVAIAARYAQ
QKHSTQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQ
GQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAAT
PAGFAQLTHLLMGLAGGRLILSLEGGYNLRSLAKGVSASLHTLLGDPCPMLESPGAPCRS
AQISLSCALEALEPFWEILVRSVEPFKDDNMEDSTEDEDGPWEPPVLPMLTWPVPKARTG
LVYDQRMMSHHNLWDNHHPEMPQRISRIMSRLEELGLARRCLPLPARLATNAELLTCHSA
EYVSRLRATERMKSRELHREGANYDSIYICPSTFACAQLATGAVCRLVEAVLRGEVLNGA
AIVRPPGHHAEQDAACGFCFFNSVAVAARHAQALSGRALRILIVDWDVHHGNGTQHMFED
DPSVLYMSLHRYDHGTFFPMGHEGASNQIGRAAGIGFTVNVAWNGPRMGDADYLAAWHRL
VLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLANGRVLLILEGGY
NLTSISESMAACIHSLLGDSPPLLALQRPPLSGALASITETIQVHRRYWRSLRVTKAEDK
EELSISKSVTKKASQPANPGLTERMTPPQENILGAGMGKVTAALSAEESTPSQTKSETAV
VVLTVEQPSEAAVEGTIEGQTISEEAVGGATQGPTTSEEAPGGATEGQTTLEEVAGGATQ
DQTTSEEAEGVATQCQTTSEEAAKEATLGQTTSEKTGGKAMLHQTIAEAAEGEGMIDQTT
PEKTSRGATLDQTTSEEAVKGAELIQTPLDSCTEDQTTPTSPMQEAKPQISLSQLTGNNK
TLELDNKAQATTESQAPEEEGLLGEAAGGQAMDDSMLMQAFGNLVDTTQATFYAVMPRSW
CPHLVAVCPTPAAGLNVTQPCQDCGTCRENWVCLSCYQVYCARYVNAHMLRHYEDSGHPL
VLSYVDLSAWCYPCQAYVHHEALLDVKNIAYRDKFGEDMPH
NT seq 3726 nt NT seq  +upstreamnt  +downstreamnt
atgacctccaccggccaggatgccaccacaaccaggcagagaaggaataggcacagtccc
cagttaccccctcatgactccagcgtcacttcgaaacgaagtgttaagaagggcactgga
ccccgcaccgctcacagtctagcggaattaaagaagaaaggcaaaatgaagaagcttagc
caagcagcttctgaagaagacctagtcatggggctgcaagggctggatctgaaccttgag
gccaaggctctagctggcactggcttggtgttggacgagcagctaaatgaattccattgt
ctctgggatgacagctttcctgaaagccctcagcggttccatgccatcaaggagcaactg
atccaggagggcctcctggatcgctgtgtgtcctttccggcccggttcgccgaaaaagag
gagctgatgttggttcacagcctagagttcattgatctgatggaaacaacccagtatatg
agtgaggaggaactccgcgtcctagcagacacctatgactcagtttatctgcatccgaac
tcatatacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgcagtcttg
ggggctgagatccggaatggcatggccattgtcaggcctcctggacatcatgcccagcac
agtcttatggatgggtattgcatgttcaaccatgtggctatagctgcccgctacgcccag
cagaagcacagcactcagagggtccttatcgtggattgggatgtgcaccatggtcaagga
acacagttcaccttcgaccaggaccccagtgtcctctatttctccatccatcgctatgag
cagggtcggttctggcctcaccttaaagcctctaactggtccaccacaggttttggacaa
ggccagggatataccatcaatgtgccttggaaccaggtggggatgcgggatgctgactac
atcgctgctttcctgcacgtcttgctgccagtcgcccttgagttccagcctcagttggtc
ctggtggctgctggatttgatgccctccaaggagaccccaagggtgagatggccgccact
ccagcagggtttgcccagctcacccacctgctcatgggtctggcaggaggcaggctgatc
ctgtctctggagggtggctacaatctccgctcccttgccaaaggtgtcagtgcctcactc
cacacccttctgggagacccttgtcccatgctggagtcgcctggtgccccctgccggagt
gcccagatctcactctcctgtgctctggaagccctggagcctttctgggagatcctggtg
aggtcagtcgagcccttcaaggatgacaacatggaggacagcacggaggacgaggacggc
ccctgggagccccctgtgctcccgatgctgacctggccagtgcccaaggcccgcacaggg
ctggtctatgaccagcgtatgatgagccatcacaacttatgggacaaccaccaccctgag
atgcctcagcgcatctcccgaatcatgagccgcctagaggagctgggccttgccaggcgc
tgcctccccctgcccgcacgtcttgccactaatgctgagctgctcacctgccacagtgct
gagtacgtgagtcgtctccgggccacagagaggatgaaatcccgggagcttcaccgtgag
ggcgccaactatgactctatctacatctgtcccagcacctttgcctgtgcacaactggcc
actggcgcagtctgccgcttggtggaggctgtactcaggggagaagttttgaatggtgct
gccatcgtgcgccccccaggacaccatgctgagcaggatgcagcctgtggtttctgcttt
ttcaactctgtggctgtggcagctcgccatgcccaggccctcagtgggcgtgctctgcgg
atcctgattgtggactgggacgttcatcatggcaatgggactcagcacatgtttgaggat
gatcccagtgtgctgtatatgtccctgcaccgctatgatcacggtaccttcttccccatg
gggcatgagggtgctagcaaccagattggccgggccgctggcataggctttactgtcaat
gtggcctggaatgggccccgcatgggtgacgctgactacttggctgcctggcatcgtctg
gtgcttcccattgcctatgagtttaatccagaactggtgctggtctcagctggttttgat
gctgcacggggagacccactggggggctgccaagtgtcacctgagggctatgcccacctt
actcacctgctgatgggccttgccaatggccgtgttctccttatcctagagggtggttat
aacctgacatccatctcagagtctatggccgcctgcattcactctctccttggagactca
cctcccctgctggccttgcagcggcccccgctttcaggagccctggcctccatcactgag
accatccaagtccatcgcagatactggcgtagcttgcgggtcacaaaggcagaagacaag
gaggaactctccatttctaagtctgttaccaagaaggcatcccaaccagccaatcctggg
ttgactgagaggatgaccccgccacaagagaacatcctgggagcaggcatggggaaggtc
accgcagcattatctgcagaagagtccactccaagccagactaagtcagaaacagctgtg
gtggtgttgactgtggagcagccctcagaggcagctgtggagggaaccatagagggccag
accatctcagaggaggctgtggggggagccacacagggcccaaccacctcagaggaggca
ccagggggagcaaccgagggccagaccaccttagaggaggtggcagggggagccacacag
gaccagaccacctcagaggaggcagagggggtagccacacagtgccagaccacttcggag
gaggcagcaaaggaagccactctgggccagaccacctctgagaagactggagggaaagcc
atgctgcaccagaccatcgcagaggcagccgaaggggaaggcatgatagaccagaccact
ccagaaaagacttcaaggggagctacacttgaccagaccacctcagaggaggctgtgaag
ggagcagaactgatccaaactcctctagactcatgcacagaagaccagaccacccctacc
tcacctatgcaagaagccaaaccccaaatatctctcagtcagctgactgggaataacaaa
accttggaactagacaacaaagcacaggcaaccacagaatctcaggccccagaagaggag
ggcctcctaggagaggcagctggaggtcaggccatggatgattctatgctgatgcaggca
tttgggaaccttgttgacactacacaggccacattttatgctgtaatgccacggtcctgg
tgtccccatttggtggcagtatgccccacacctgcagcaggcttaaatgtgacccagcct
tgccaggactgtggaacgtgcagggagaattgggtgtgtctgtcctgctatcaggtctac
tgcgctcgttatgtaaatgcccacatgctccgacactatgaagactctggacacccattg
gtcctcagctacgttgacctgtctgcttggtgttacccctgccaggcctatgtacaccat
gaggctctcctagacgtgaagaacatcgcctaccgggacaagtttggggaggatatgcct
cattaa

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