KEGG   Tupaia chinensis (Chinese tree shrew): 102493599Help
Entry
102493599         CDS       T02978                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102493599 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tup03400]
    102493599 (LIG4)
Enzymes [BR:tup01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102493599 (LIG4)
DNA repair and recombination proteins [BR:tup03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102493599 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C BRCT DNA_ligase_IV BRCT_2 RNA_ligase mRNA_cap_enzyme LIG3_BRCT
Motif
Other DBs
NCBI-GeneID: 102493599
NCBI-ProteinID: XP_006159698
LinkDB All DBs
Position
Un
AA seq 911 aa AA seqDB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGRADKIRHFREFLDSWRKFHDALHKNQKNV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSVASNNSAKRKDLIKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGVSQQTIFSAFHNDAAELHNVTTDLEKVCRQLHDPTVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYDYTD
QFGASPREGSLTPFIHNAFKTDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVEDSEL
QTCYCVFDVLMVNNKKLGHETLRKRYEILSSTFAPILGRVEIVQKTQAHTKNEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAENPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKKSPPSSILC
GTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCTLRFPRIERIRDDKVWHECMTLGDLE
QLRGKASGKLASKHYFLGGDDEPREKKRRTAPKTRKVIGIIQHLKAPNLSNINKVSDIFE
DVEFCVMNGLDSHPKSDLENRIAEFGGYIVQNPGPDTYCVIAGSENVRVKNIISSNKHDV
VKPEWLLQCFETKSCVPWQPRFMIHMCPSTKQHFAHQYDCYGDSYFVDTDLNQLKEVFSG
IKHSEEQTPENMASVIADLEYRYVWDHSPLSMFRHHTIYVDLYTVINDLSTKIKGTRLII
KALELRFHGAKIVPCLAEGVSHVIIGADHTRVADFKAFRRTLKRKFKILQEDWVTDSIDK
CELQEENQYLI
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atggctgcctctcaaacttcacaaactgttgcatcacatgttccttttgcagatttatgt
tcaactttagaacgaatacaaaagagtaaaggacgtgcagataaaattagacattttaga
gaatttttagattcttggagaaaatttcacgatgcccttcataagaaccagaaaaatgtc
acagactctttttatccagcaatgagacttattcttccccagttggaaagagagagaatg
gcttatggaatcaaagaaactatgcttgctaaactttatattgaattgcttaatttacct
agagatggaaaagatgcccttaaacttttaaattacagaactcctacaggaactcgtgga
gatgctggggactttgcaatgattgcatactttgtattgaagccaagatgtttacaaaaa
ggaagtttaaccatacagcaagtaaatgaccttttagactcagttgccagcaacaattct
gccaaaagaaaagacttaattaaaaagagccttctgcaacttataactcagagttcagca
cttgaacaaaaatggcttatacgcatgattgtaaaggacttaaaacttggtgttagtcag
caaactatattttctgcttttcataatgatgctgctgagttgcataatgtcaccacagat
ctggaaaaagtctgtaggcaactgcatgatcctactgtaggactcagtgacatttctatt
actttattttctgcctttaagccaatgctagccgctatagcagatatcgagcgaattgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctggatggtgagcggatgcaa
atgcacaaggatggggatgtttatcagtacttctcccggaatggatatgactacactgat
cagtttggtgcttctccacgtgaaggttctcttaccccattcattcataatgcattcaaa
acagatatacagaactgtatccttgatggtgagatgatggcctataaccctgagacccaa
acgtttatgcaaaaagggaataaatttgacattaagagaatggtagaagattctgaacta
cagacttgttactgtgtttttgatgtattgatggttaataataaaaagctaggacacgag
accctaagaaagaggtatgagattcttagtagtacttttgcaccaatactgggtagagtg
gaaatagtgcagaagacacaagctcatactaagaatgaagtaattgatgcattgaatgaa
gcaatagataaaagagaagagggaatcatgataaaacatcctctgtccatttataagcca
gacaaaagaggtgaaggatggttaaaaattaaaccagagtatgtcagtggcctaatggat
gaattggacatcctgattgttggaggctattggggtaaaggttcacggggtgggatgatg
tctcattttttgtgtgctgtagcggagaatccccctcctggtgaaaagccttctgtgttt
catactctttgtcgtgttggctcaggttacaccatgaaagaactgtatgatctgggtttg
aaactggccaaacattggaagcctttccataagaaatctccaccaagtagcattttatgt
gggacagagaagcccgaagtgtatattgaaccttgtaattccgtcattgttcagattaag
gcagcagagattgtccccagcgacatgtataaaactggctgcacgttgcgtttcccacgt
attgaaaggataagagatgacaaagtttggcacgaatgcatgaccctgggtgacttggaa
caactgaggggaaaggcttctggaaagcttgcgtctaaacactacttcctgggtggagat
gatgagccacgagaaaaaaaacggagaactgccccaaagacgaggaaagttattggaatt
atccagcacttaaaagcacctaatctttctaacataaacaaagtttctgacatatttgag
gatgtagagttttgcgttatgaatggattagacagccatccaaagtctgacctagagaat
agaattgcagaatttggtggatatatagttcaaaatccaggtccagacacatactgcgta
attgcagggtctgagaacgtcagagtgaaaaacatcatttcttcaaataaacatgatgtc
gtcaagcctgagtggcttttacagtgttttgagaccaaaagctgtgtgccatggcagccc
cgttttatgattcatatgtgcccatcaaccaaacagcattttgcccatcagtatgattgc
tatggtgatagctactttgttgatacagatttgaaccaactgaaggaagtgttctcagga
attaaacattctgaagaacagactcctgaaaacatggcttctgtgattgccgatttagag
tatcgttatgtctgggaccactctccactcagtatgtttcgacaccacaccatttatgtg
gatttgtatactgttattaatgacttgagtaccaaaatcaaggggacaagattaatcatt
aaagctttggagcttcgatttcatggagcaaaaatagttccttgcttagctgagggagta
tctcatgtaattattggggcagatcatactcgtgttgcagactttaaagcttttagaaga
actcttaagagaaagtttaaaattttacaagaagattgggtaactgattcaatagacaag
tgtgaattacaggaggaaaaccagtatttgatttaa

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