KEGG   Trichophyton verrucosum: TRV_03862Help
Entry
TRV_03862         CDS       T01615                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tve  Trichophyton verrucosum
Pathway
tve03030  DNA replication
tve03410  Base excision repair
tve03420  Nucleotide excision repair
tve03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tve00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    TRV_03862
   03410 Base excision repair
    TRV_03862
   03420 Nucleotide excision repair
    TRV_03862
   03430 Mismatch repair
    TRV_03862
Enzymes [BR:tve01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TRV_03862
    6.5.1.6  DNA ligase (ATP or NAD+)
     TRV_03862
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TRV_03862
DNA replication proteins [BR:tve03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    TRV_03862
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     TRV_03862
DNA repair and recombination proteins [BR:tve03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TRV_03862
   NER (nucleotide excision repair)
    Other NER factors
     TRV_03862
   MMR (mismatch exicision repair)
    Other MMR factors
     TRV_03862
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 9578929
NCBI-ProteinID: XP_003022045
UniProt: D4D9R9
LinkDB All DBs
AA seq 844 aa AA seqDB search
MAGPLKKKRKVDSTRVPQNTRSIASYFRAGNKATSQQITSTEHDQLTDEQLARKLQTEWN
KKSQDESESSTPGHRATENLLEEKLRASDEVADASSSSDKGSLPDTLALTPGKENKPKGI
LSLQSSSTAEDTISFSLPFDLSPLEFDPHEQKEKLQAHWDAEGGKASYAILARAFSLVNG
TQSRIKIVDILVNLLRLIIVGDPQSLLPAVWLATNAFAPPYVPIELGLGGSAISKALKRA
YGLDNHGLKSLYNKHGDAGDVAFEAKKKQSFTLRRPKPLTIRSVYDALMKIANSKGTGSQ
ETKQRIVEKLLQDTRGAEESRYIVRTLVQHLRIGAVKTTILIALARAFLYSKPPAATFPI
RSRAELMRLSKEELSSIYSQAEETIKACYARHPNYNMIVPCLLENGVSAELLTKCGITLH
VPLLPMLGSITRDLPQMLTRLHGRSFTCEFKYDGQRAQVHCDAAGKVSIFSRHLELMTDK
YPDLVSLVPQIRSGAVSSFIMEGEVVAVNNETGELLPFQTLTNRAKKNVEIGSIKVNVCL
FSFDLMYLNGQPLLDRTFRERRELLRSLFVEVPNQFTWVKSIDAFPSDSDTVLNFFNDAL
QVKCEGIMVKVLDDKPVDCLLQVEDTATALPDGELLPPEEDQKQESTDTAEKQRGNRKRP
LLSTYEPDKRLESWLKVKKDYSASSETLDLIPIAAWHGQGRKAKWWSPILLAVRNPETGS
LEAVTKCMSGFTDKFYEANKEKYAEGSDNIISRPSYVEYCGEPEVWFQPQEVWEMAFADI
TLSPTYTAAIGLVSDERGLSLRFPRFLRVREDKSIDEASTSDYLAHLWDKQAERAKVAEP
RAED
NT seq 2535 nt NT seq  +upstreamnt  +downstreamnt
atggccggtcctttaaaaaagaagagaaaggttgattcgactagggtgccgcagaatacc
cggagcattgcttcatattttcgtgcagggaataaagcaacgtcacagcaaatcactagc
acagagcatgatcagcttacggacgagcagctggcccggaagcttcagacagaatggaat
aaaaaaagccaggatgaatctgaatcttccacgcctggtcatagagcaacggaaaacctt
ctggaagaaaaactgcgagcgtctgatgaagtagccgatgctagctcaagcagcgacaaa
ggcagcttacctgatactctagctcttacacccggaaaagagaataagcccaagggaata
ctatctctgcagagctcttcaacagctgaggataccatatcattttcattgccttttgat
cttagtccgttggaattcgatccgcatgagcaaaaggaaaaactccaggcacactgggat
gcggaaggggggaaagcatcgtatgcaattttagctcgtgccttttctcttgtcaatggc
acacagagtaggatcaaaatagtcgatattcttgtgaaccttcttaggcttataatcgtt
ggtgacccacagagccttcttcccgcagtgtggttggcaacaaatgcatttgctccgcca
tacgtaccaattgaactggggctaggagggtctgccatatccaaagcattgaaaagagca
tatggtttggataaccacggtctcaaatcactttacaataaacatggcgatgctggcgat
gtggcttttgaagcaaagaaaaagcaatcatttacactgagacgaccaaagccgctaacc
atcagaagtgtatacgatgcgctgatgaaaattgcgaacagcaaaggcacaggcagtcag
gagacaaagcaaagaatcgtcgagaaattgctccaagacacgcgaggtgcagaggagagt
cgatacatcgtccgtacacttgttcaacatctccggattggagctgttaaaacgactatt
ttgattgcacttgcaagagcgtttctctactcaaagccaccggcagccacatttcccata
cgttcgcgcgcagagctcatgaggttgagcaaagaggagttatcaagtatctactcccag
gcggaagagactatcaaagcttgctatgcccggcatcctaactacaacatgattgttcca
tgtttattggaaaatggtgtttctgctgaacttcttacgaaatgcggcatcacattacac
gttcctttattacccatgttgggtagtattacacgggatcttccgcaaatgttgaccagg
ctacatggccgatcctttacctgcgagttcaaatatgatgggcaaagggcacaggtacac
tgcgatgcagcggggaaggtctccattttctctcgccatttagaactcatgacggataaa
tacccggacttagtgtctcttgtccctcagattcgatctggagctgtttctagcttcatt
atggaaggtgaagtggttgctgttaataatgaaaccggagaattgcttccttttcaaaca
cttacgaatcgggcgaagaaaaatgtggaaataggtagtatcaaagtcaatgtctgttta
ttctcgtttgacttgatgtacctgaatgggcagccgctgcttgacagaacattccgagaa
agacgagaacttcttaggagtttgttcgttgaggttccaaatcaatttacatgggtaaag
agtatagatgcattcccatctgattcagacactgttctgaactttttcaatgatgccctt
caagtaaaatgcgagggcataatggttaaagttctggatgataagccagttgactgcctg
ttgcaggtagaagataccgccacagctcttcctgatggtgaattacttccacccgaagag
gatcaaaaacaagagtctacagatactgctgagaagcagcgagggaaccggaaacggccg
ctgctgtcaacatacgagcctgacaaacgcctcgaatcttggcttaaagtgaagaaggat
tatagtgcttcttcggagaccttagacttgattcccattgcggcatggcatggccaaggt
cgaaaggccaaatggtggtctccgatacttcttgctgtgcgaaatcctgaaaccggctct
ctcgaggcagttaccaagtgtatgtccggtttcactgataagttttatgaagcgaataag
gagaagtatgcggaaggcagcgacaatataatctcacgcccaagctatgtggagtactgt
ggcgagccggaggtttggtttcaacctcaggaggtgtgggagatggcctttgcagatatc
acgctgagtcctacgtatactgcagccataggactggttagtgatgaacgcggcctgagc
cttcgattcccaaggttcttgagagtgagagaggacaagagcattgatgaagctagcaca
tccgactatcttgcccatctttgggacaagcaggcggagagagcaaaggtggcggagcct
cgagctgaagattga

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