Thermostichus vulcanus: NIES2134_118060
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Entry
NIES2134_118060 CDS
T05980
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tvn
Thermostichus vulcanus
Brite
KEGG Orthology (KO) [BR:
tvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvn03032
]
NIES2134_118060 (topA)
03400 DNA repair and recombination proteins [BR:
tvn03400
]
NIES2134_118060 (topA)
Enzymes [BR:
tvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NIES2134_118060 (topA)
DNA replication proteins [BR:
tvn03032
]
Prokaryotic type
DNA Topoisomerases
NIES2134_118060 (topA)
DNA repair and recombination proteins [BR:
tvn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NIES2134_118060 (topA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
MarR_2
DUF6429
Motif
Other DBs
NCBI-ProteinID:
BAY53111
LinkDB
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Position
complement(1846748..1849411)
Genome browser
AA seq
887 aa
AA seq
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MSTLVIVESPTKARTIRKFLPPDYRVEASMGHVRDLPRSAADVPPEFRGEEWATLGVNVA
AGFEPLYIVPKEKQKVIKELKAALKTADELLLATDEDREGESISWHLLQLLEPKVPVRRM
VFHEITEEAIQEALHNCRDVNQQLVRAQETRRILDRLVGYTLSPLLWRKIAPHLSAGRVQ
SVAVRLLVQRERERLAFRKGQFWDLKATLDQRGTLFPARLVSVGGQRLATGNDFDPTTGQ
LRNPDAVLLLDEAAANALRDRLLTETWTVTEQEERQQTRKPAPPFTTSTLQQEANRKLHL
SAQETMRIAQKLYEEGYITYMRTDSVHLSDQAIAAARSCVEAMYGKAFLSPQPRQYTTKT
KGAQEAHEAIRPAGSQFRTPQETGLRDRELELYELIWKRTVASQMADARVTLLTVSITAG
DALFRAHGKRIDFPGFFRAYVEGSDDPDAALESQEVMLPLMQVGDILRCQALESVRHETQ
PPPRYTEASLVKALEQAGIGRPSTYATIISTIQDREYAIRRGNALEPTFTAFAVTALLEK
YFPDLVDINFTARMEQTLDDISTGEVQWQPYLESFYLGENGLEQQVKERERTIEATEARA
IALPELNAEVVVGRFGPFVVYQNGNGSEPIKASLPQDATPGSLTREQVEQLIRQKLEGPD
KLGVHPETGEPIFLLTGRFGPYVQLGEATEANPKPKRASLPKGVSPDEVTLDLAVTLLSL
PRTLGVHPETGKLIQANQGRFGPYIVHDPEGEKDYRSLKGEDDVYTITLERALELLATPK
SSRARAKKQVLAVVGTHPEDGKLVQIFDGPYGPYVNHGKVNASLPEGVTPETMTLEQALL
LLAEKAPKKTRRSATATAPKPKSTIKRTSKKTATQTANTSRRKSTET
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccttgtcatcgtcgaatccccaaccaaagcccgtaccattcgcaagtttctg
ccgccggactatcgcgttgaagcctcgatggggcatgtccgtgatctgccccgcagtgcc
gctgatgtgccccccgaattcaggggagaagagtgggcaaccctaggggtgaatgtcgct
gctggctttgaacccctctacattgttcctaaagagaagcaaaaagttatcaaagaattg
aaagctgccctcaaaaccgccgatgaactcctgctcgcgactgatgaagaccgggagggg
gaaagcattagttggcacttgctgcaactgttggagccaaaggtgccggtgcggcggatg
gtcttccatgaaattactgaggaagccatccaagaggcgctgcacaattgccgcgatgtc
aatcaacaattggtgcgtgctcaagaaacgcggcgtatcctcgatcgcctagtgggctat
accctgtcccccctgctgtggcggaaaattgccccccatctgtcagcggggcgggtgcag
tcggttgcagtgcgcctattggttcaacgggagcgagagcggttggccttccgtaagggg
caattttgggatctcaaggccaccttagatcaaaggggaaccctctttccagcgcgtttg
gtgagtgtgggtggtcagcgcttggccacaggcaatgattttgatcccactacaggacag
ctacgtaatcctgatgctgtcttgctcttggatgaggcagccgccaacgccctgcgcgat
cgcctgctaacggaaacctggacggtcaccgaacaagaagagcgccaacaaacccgcaaa
cccgctcccccctttaccacctcgaccctgcaacaggaggctaaccgcaaactgcacctc
tcggcccaggagacgatgcgcattgcccaaaagctctacgaagagggctacatcacctat
atgcgtacggactcggtccatctgtcggatcaggcgatcgctgccgcccgcagttgtgtg
gaagccatgtatggcaaagcctttttgtcaccccagccgcgtcagtacaccaccaaaacc
aagggggcccaagaagcccacgaagcgattcgccctgcgggtagccagtttcgcactccc
caagaaaccggccttagggatcgggaactggaactctacgaactgatctggaagcgtacg
gtggcctcccagatggctgatgcccgtgtaactctactaacggtgtcgattacggctggg
gatgccctcttccgtgcccacggtaaacgcattgattttccagggtttttccgtgcctat
gtggaaggttccgatgatcccgatgccgccctcgaaagccaagaggtgatgctgcccctg
atgcaagtgggggatattctccgctgccaagcccttgaaagtgtgcgtcacgaaacccag
ccgccgccgcgctacaccgaagccagccttgttaaagcccttgagcaagccggtattggg
cgccccagcacctatgccacaatcattagcacgatccaagaccgcgagtatgccattcgg
cgaggcaatgcccttgaacctacgtttactgcctttgcggttacggcgctgctagagaaa
tacttccccgacttggtggatattaactttacggcgcggatggagcaaaccctggatgat
atttccacaggggaggtgcagtggcagccttaccttgaatccttctatctgggtgaaaat
ggccttgagcagcaggtcaaagagcgggagcggacaattgaggcaactgaagcacgggcg
atcgctttgccagaactgaacgctgaagtggtggtgggtcgctttggtccctttgtggtc
tatcaaaatggcaatggtagtgagcccattaaggcctccttgccccaggacgccacccca
ggtagtctcacccgtgaacaggtggagcaattaattcgccaaaaactggagggtcccgac
aagctgggggtccatcctgaaacgggagaaccgatttttctgctgacggggcgctttggt
ccctatgtgcagttgggggaagccacagaggccaatccaaaacccaaacgagcgtcccta
cccaagggagtgagtcccgatgaagtcaccctagacttggcggttactctgttatcactg
ccgcggacattgggggtgcatcccgaaactggcaaactgattcaagccaatcaaggtcgc
tttggcccctacattgtccacgatcccgagggtgaaaaagactatcgttccctcaagggg
gaggatgatgtgtatacgattaccctagagcgtgccctagagctgctggcaacaccgaaa
tcgagtcgcgctcgggccaaaaaacaggtgcttgcggtggtagggactcaccccgaggat
ggaaaactggtacagatcttcgacggcccctatggcccctatgtcaaccacggtaaggta
aatgcctccctgccggagggggtgacaccagagacaatgacccttgagcaagccctgctc
ctgttggcggaaaaagcacccaagaaaacccgccgcagcgcaacggccactgccccgaaa
cccaaatcgacaatcaaaagaaccagtaaaaagacggccacccagaccgcaaacactagc
cgccgtaagtcaacggaaacctag
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