Thioalkalivibrio versutus: TVD_02325
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Entry
TVD_02325 CDS
T03959
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TVD_02325 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvr03021
]
TVD_02325 (rpoB)
03400 DNA repair and recombination proteins [BR:
tvr03400
]
TVD_02325 (rpoB)
Enzymes [BR:
tvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TVD_02325 (rpoB)
Transcription machinery [BR:
tvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TVD_02325 (rpoB)
DNA repair and recombination proteins [BR:
tvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TVD_02325 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKJ94278
UniProt:
A0A0G3FZC2
LinkDB
All DBs
Position
488617..492696
Genome browser
AA seq
1359 aa
AA seq
DB search
MALSYTEKKRIRKDFGKRPQILEVPYLLETQLTSYRDFLQADRASDGRDPMGLHAAFQSV
FPIVSYSGHVQLEYVSYRLGEPMFDVKECQIRGVTYAAPLRVLLRLVIHDKEAPAGSTVV
KEVKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTQGSAQKLLYN
ARIIPYRGSWLDFEFDAKDGVFVRIDRRRKLPASILLRALGMDTEEILTTFFEFNQLTLD
DDGGELDLIPERMRGETAVIDITDGETVIVEAGRRITPRHIREIEKAGINTLRVPDEYLL
GRVLAKGVVDESTGELIANANDALTQEMLDKLRAEGVKSLETIYTNDYDHGPYMSDTLRL
DPTKSQLEAQVEIYRVMRPGEPPTKDAAENLFSNLFFSEDRYDLSAVGRMKFNRRVGRDT
DEGAGVLSPEDILDVLKVLIDLRNGNGRTDDIDHLGNRRIRSVGEMAENQFRLGLVRVER
AVKERLTVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNRYGFLETPYRK
VEEGKVTEEIVYLSAIEESQYVIAQANAAMDEEGRLSDDLVSCRHQEEFTISSPDKIQYM
DVSPKQIVSVAAALLPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGIERAVAIDSG
SAIVAKRGGTVDSVDAGRVVVRVNDDETVAGEPGVDIYNLTKYSRSNQNTSINQRPLVAV
GDEIARGDAIADGSSTDLGELALGQNMMVAFMPWNGYNFEDSILISERVVQEDRYTTIHI
EELNCVARDTKLGQEEITADIPNVSESLLNKLDESGVVYVGAEVNPGDILVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGIEGTVIDVRVFTRDGVEKDARARSIEADDL
AAVQKDLKDQLRIYEDDIYARVERLLVNKTAAGGPDGLGDGSKVTKKYLQGLSRDKWFEV
RLQDDAVNSQLEDLGRQIKDQHEAFEKKFEHQKAKLAAGDDLPPGVQKMVKVYVAVKRRL
QPGDKMAGRHGNKGVISMIVPEEDMPFLEDGTPVDVVLNPLGVPSRMNVGQVLEVHLGWA
ARGLGHKINRMLEAQAEIAKLREFLDKIYNNRERKVDLDSMSDPEIITLCRNLRAGVPMA
TPVFDGAEEAEIKEMLRLADLPETGQAQLYDGRTGDGFDRPVTVGYMHMLKLNHLVDDKM
HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKADDVQGRNK
MYKNIVDGEHHMEANVPESFNVLMKEIKALGINIELEQD
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggccctcagttataccgaaaagaaacgtatccgcaaggacttcgggaagcgtccccag
atcctcgaagtcccgtacctgctggaaacccagctgacctcctatcgggatttcctgcag
gcggaccgagcgtccgacgggcgggatccgatgggcctgcatgcggcgtttcagtcggtt
ttccccatcgtcagttattccggtcatgtccagctcgagtacgtgagctatcgcctgggc
gaaccgatgttcgacgtgaaggaatgccagatccgtggcgtgacctatgcggccccgctg
cgtgtcctcttgcgcctggtgatccacgacaaggaagccccggcgggttccaccgtggtc
aaggaggtcaaggagcaggaagtctacatgggcgaaatgccgctcatgaccgagaacggc
acctttgtcatcaacggtaccgaacgcgtaatcgtgtcgcagttgcaccgctcgccgggc
gtgttcttcgacagcgacaagggcaagacccagggcagtgcacagaaactgctttataac
gcccgcattattccgtaccgcggttcctggctcgacttcgagttcgacgccaaggacggg
gtcttcgtgcgcatcgaccgtcgccgcaagctgccggcgtcgatcctgctgcgcgcactg
ggtatggataccgaagagatcctcaccacctttttcgaattcaatcagctcaccctcgac
gatgacggcggcgagctggacctgatccccgagcgcatgcgcggcgagactgccgtgatc
gacattaccgatggcgaaaccgtcattgtcgaggccggtcggcgtattacgccgcgccat
atccgggagatcgagaaggccggcatcaacaccctgcgggtgccggacgaatacctgctg
ggtcgggtactggccaagggcgtggtggatgaatccaccggggaactgatcgccaatgcc
aatgacgccctgacccaggagatgctcgacaagctgcgcgccgagggcgtgaagtcgctg
gagaccatctacaccaacgactacgaccacggtccgtacatgtcggatacgctgcgtctg
gatccgaccaagagccagctggaggcccaggtcgagatctaccgcgtgatgcgcccgggc
gagccgccgaccaaggacgctgcggagaacctgttctccaacctgttcttctcggaagat
cgctacgacctgtccgccgtgggccggatgaagttcaaccgccgcgtgggtcgcgatacc
gacgagggtgcgggcgtgctgtcgccggaagacatcctggatgtcctgaaggtgctgatt
gacctgcgtaacggcaacggccgtaccgatgacatcgaccacctgggcaaccgtcgcatc
cgcagcgtgggcgagatggcggaaaaccagttccgcctgggcctggtgcgtgtcgaacgc
gcggtcaaggagcgtctcaccgtcgccgagagcgaaggcctgatgccgcaggaactgatc
aacgccaagccggtggccgccgcggtcaaggaattcttcgggtccagccagctgtcgcag
ttcatggaccagaacaacccgctgtccgaggtgacgcacaagcggcgtatctcggccctg
ggtccgggcggacttacccgcgaacgtgctggcttcgaagtgcgcgacgtgcacccgacg
cattacggtcgcgtgtgcccgatcgagactccggaaggcccgaacatcggtctgatcaac
tcgctggccgtgtatgcccgcaccaaccgctacggcttcctggagacgccgtatcgcaag
gtcgaagagggaaaggtgaccgaggagatcgtctacctctccgcgatcgaagagagccag
tacgtgatcgcccaggcgaacgcggcgatggatgaggagggtcgcctgagcgatgacctc
gtgtcctgccgtcaccaggaggagttcacgatctcgtctccggacaagatccagtacatg
gacgtctcgccaaagcagatcgtgtccgtggccgccgcgttgctgccattcctggagcat
gacgatgccaaccgcgccctgatgggcgcgaacatgcagcgtcaggccgtgccgtgcctg
cgggccgacaagccgctggtgggtaccggtatcgagcgcgccgtcgccatcgactccggc
tccgcgatcgtcgccaagcgcggcggtacggtggactcggtggacgcgggtcgtgtggtg
gtccgtgtgaacgacgacgaaaccgtcgccggcgagccgggcgtggatatctacaacctc
accaagtactcgcgttccaaccagaacacctccatcaaccagcgtcctctggttgcggtg
ggcgacgaaatcgcccgcggtgacgcgattgccgatggctcgtccacggatctgggcgag
ctggcgctggggcagaacatgatggtcgcgttcatgccctggaatggctacaacttcgag
gactcgattttgatctcggagcgcgtggtgcaggaggatcgttacaccacgatccacatc
gaggagctcaactgcgtcgctcgtgacaccaagctgggccaggaagagatcaccgcggat
atcccgaacgtctccgagtcgttgctgaacaagctggacgagtccggcgtggtctacgtc
ggggccgaggtgaacccgggcgacatcctggtcggcaaggtcacgccgaagggcgagacc
cagctgacgccggaagagaagctcctgagggcgatctttggcgagaaggcctcggacgtg
aaggacacctccctgcgtgtgccgtccggcatcgaggggacggtgatcgacgtgcgtgtt
ttcacccgcgacggtgtggagaaagacgcccgcgcccggtcgatcgaggccgacgatctc
gccgctgtgcagaaggacctgaaggaccagctgcgcatctacgaggatgacatctacgcc
cgcgtcgagcggctgctggtcaacaagaccgccgccggtggcccggatgggctgggtgat
ggctccaaggtgaccaagaagtatttgcaggggctgtcccgcgacaagtggttcgaggtc
cgcctgcaggacgatgcggtcaacagccagctggaagacctgggtcgccagatcaaggat
cagcacgaggcgttcgagaagaagttcgagcaccagaaggccaagctggccgcgggcgac
gacctgccgccaggcgtgcagaagatggtcaaggtctacgtggccgtgaagcgccgcctg
cagccgggcgacaagatggccggtcgccacgggaacaagggcgtgatctcgatgatcgtg
ccggaagaggacatgccgttcctcgaggacggtaccccggtcgacgtggtgctgaacccg
ttgggcgtgccctcgcgcatgaacgtcggccaggtgctggaagtgcacctgggttgggcg
gcccgaggtctcggtcacaagatcaaccgcatgctcgaggcgcaagccgagatcgcaaag
ctgcgcgagttcctcgacaagatctacaacaaccgcgaacgcaaggtggacctcgactcc
atgtcggaccccgagatcatcaccctgtgccgcaacctgcgcgctggcgtgccgatggcg
acgccggtgttcgacggcgccgaagaggccgagatcaaggagatgctgcgtctggcggac
ctgccggaaacggggcaggcccagttgtacgacgggcgtaccggggacggcttcgaccgc
ccggtcaccgtgggctacatgcacatgctgaagctgaaccatctggtcgacgacaagatg
catgcacgttccaccggcccgtattcgctggtcacccagcaaccgttgggcggcaaggcg
cagttcggtggtcagcgcttcggcgaaatggaggtctgggcactggaggcctacggcgcc
gcctacacgttgcaggaaatgctgacggtgaaggcggacgacgtgcagggccgcaacaag
atgtacaagaacatcgttgacggtgagcaccacatggaggccaacgtccccgagtcgttc
aacgtgctcatgaaggagatcaaggcgctcggcatcaatatcgagctcgagcaggactga
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