Thioalkalivibrio versutus: TVD_10285
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Entry
TVD_10285 CDS
T03959
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TVD_10285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvr03400
]
TVD_10285
Enzymes [BR:
tvr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TVD_10285
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TVD_10285
DNA repair and recombination proteins [BR:
tvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TVD_10285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AKJ95722
UniProt:
A0A0G3G891
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All DBs
Position
2228589..2229404
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTRRGLAPLLAGRRITAFEVREPRLRWPVPPELVQQLAGARVRSLTRRAKYL
LLETDRTGLLLHLGMSGSLRHCTPETPLRRHDHLTLHLDNGYQVRLHDPRRFGCCLPLPE
GGLSHTLLAGLGPEPLDPEFDGDCLFRRSRGRRGPVKAFIMDQAIVVGVGNIYATEALFL
AGVRPGRAAGRVTRAEYERLASHIKAVLAAAIKQGGTTLRDFLHEDGTHGYFRQSLRVYG
RAGEPCPVCAEVLRTRRIGQRASSYCPACQK
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcccgaggtcgagaccacccggcgcgggctcgcccccctgctggccggg
cgccgcatcacggccttcgaggtccgcgagccgcgcctgcgctggccggtgccgccggag
ctggtgcagcaactggccggcgcccgggtccgcagcctgacccggcgcgccaagtacctg
ttgctggagaccgatcgtaccggccttctgctgcatctcgggatgtccgggagcctgcgc
cactgcacgcccgagacgccgctgcgccggcacgatcacctgaccctgcacctggacaac
ggctaccaggttcgcctgcacgacccgcgccgcttcggctgttgcctgccgctccccgag
ggcggcttatcccacaccttgctagccggcctcggcccggaacccctggacccggagttc
gatggcgactgcctgttccgccgcagccgcggccgccggggcccggtcaaggccttcatc
atggaccaggcgatcgtggtaggagtgggcaacatctacgccaccgaggccctgttcctc
gccggcgttcggcccgggcgcgcggccggacgtgtcacgcgcgccgaatacgagcgcctg
gcaagccacatcaaggcggtgctggcggcggccattaaacagggcgggaccaccctgcgc
gacttcctgcacgaggacggcacccacggctacttccgccagtcgctgcgcgtctacggc
cgcgccggcgagccttgcccggtctgcgccgaggtattgcgcacgcgccgcatcggccag
cgcgccagcagctactgccccgcctgccagaagtag
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