Trametes versicolor: TRAVEDRAFT_136559
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Entry
TRAVEDRAFT_136559 CDS
T04795
Name
(RefSeq) polyadenylate binding protein
KO
K13126
polyadenylate-binding protein
Organism
tvs
Trametes versicolor
Pathway
tvs03015
mRNA surveillance pathway
tvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRAVEDRAFT_136559
09123 Folding, sorting and degradation
03018 RNA degradation
TRAVEDRAFT_136559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_136559
03041 Spliceosome [BR:
tvs03041
]
TRAVEDRAFT_136559
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TRAVEDRAFT_136559
mRNA cycle factors
Stress granule specific factors
TRAVEDRAFT_136559
Spliceosome [BR:
tvs03041
]
Complex C
Other components
Complex C specific factors
TRAVEDRAFT_136559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
MARF1_RRM1
Motif
Other DBs
NCBI-GeneID:
19408912
NCBI-ProteinID:
XP_008045287
JGI:
136559
UniProt:
R7S7V0
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MSAAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD
GERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGN
VLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKI
EEMKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEE
AHAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLED
DIDDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKP
LYVSLAQRREVRRQQLESQIAQRNQIRMQQAAATGIPGGYINGPMYYPPGPGAYPPPGGR
GMMGYGQPGMLPPRPRYAPNGQVPGMPLPTPYGQAPPQAYGGMPGYPRAPRPPQAGRAPP
PTDPNAPPANGAAPRPAGPQGAPAARPPPAGAQPPAARGPAPGRPQQQPPRGPAPGQGPA
PGGEVPTITAAALANASPMEQKQMLGEVIYMKIVQSQPELAGKITGMLLEMDNTELLHLL
ETPDSMNTKVNEALAVLHEFSQNDKLAAEGK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgccccctcggcgtccctttacgttggcgagctggacccgaccgtcacggag
gccatgctcttcgagattttcaacatgattggccctgtggccagcattcgcgtctgccgt
gatgctgtcactcgtcgttcgctcgggtacgcctacgttaactacctgaacgccgcagac
ggtgagcgtgctctggagcagctcaactactccctcatcaagggccgcgcttgccgcatt
atgtggtctcagcgtgaccccgctctccgcaagaccggccagggcaacatcttcatcaag
aacctggacgagcagatcgacaacaaggccctccacgacacgttcgctgctttcggcaac
gtcctgtcctgcaaggtcgctaccgacgagcacggccgctctaagggctacggtttcgtc
cactacgagaccgctgaggccgccgagactgccatcaaggccgtcaacggtatgttgctc
aacgacaagaaggtgtacgtcggccaccacatctcccgcaaggagcgccagtcgaagatc
gaggagatgaagaaccagttcacgaacatctacgttaagaacgtcgaccccgaggtcacc
caggaggagttcgtccagctgttcgagcccttcggcaggatcacctccgccgtcctccag
gtcgacgatgagggcaagagccgtggtttcggtttcgtcaacttcgacacgcacgaggag
gcgcacgccgctgtcgaggcactccacgacagcgacgtcaagggcaggaagctcttcgtt
gcccgtgcccagaagaaggctgagcgtgaggaggagctccgccggtcgtacgagcaggcc
aagatggagaagatgagcaagtaccagggcgtcaacctgtacatcaagaacctcgaggac
gacatcgacgatgagcgtctccgcggagagttcgagcccttcggcaacatcaccagtgct
aaggtgatgcgcgacgagaagggcatctccaagggcttcggtttcgtttgcttctcttct
cccgacgaggccaccaaggctgtcgctgagatgaataacaagatgatcggcaccaagccg
ctttacgtctcgctcgctcagcgccgcgaggtccgcaggcagcagctggagagtcagatc
gctcagcgcaaccagatccgcatgcagcaggccgctgccactggcatccctggtggctac
atcaacggccccatgtactaccctcccggccctggggcttaccctccccctggtggtcgc
ggcatgatgggctacggccaacccggcatgctccctcctcgcccccgctacgctcccaac
ggccaggtccctgggatgcccctcccgacgccttacggtcaggcccctccccaggcctac
ggcggcatgcctggctacccccgtgcgccccgcccccctcaggctggccgtgctccccct
cccaccgaccccaacgcccctcccgccaacggcgcggctcctcgccccgctggtccccag
ggagcccccgccgcccgtcccccgcccgctggcgctcagccccccgcggcacgcggccct
gcccctggtcgcccccagcagcagccccctcgtggacctgcccccggccagggtcccgcc
cccggcggcgaggtgccgacgatcaccgctgcggctcttgccaacgcctcccccatggag
cagaagcagatgctcggcgaggtcatctacatgaagatcgtgcagtcgcagcccgagctc
gcgggcaagatcaccggtatgttgctcgagatggacaacacggagctgctgcacctcctg
gagacccccgactcgatgaacacgaaggtgaacgaggcgctcgcggtcctccacgagttc
tcgcagaacgacaagctcgccgcagagggcaagtaa
DBGET
integrated database retrieval system
