Trametes versicolor: TRAVEDRAFT_33021
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Entry
TRAVEDRAFT_33021 CDS
T04795
Name
(RefSeq) DNA-dependent RNA polymerase II second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tvs
Trametes versicolor
Pathway
tvs03020
RNA polymerase
tvs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TRAVEDRAFT_33021
09124 Replication and repair
03420 Nucleotide excision repair
TRAVEDRAFT_33021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvs03021
]
TRAVEDRAFT_33021
03400 DNA repair and recombination proteins [BR:
tvs03400
]
TRAVEDRAFT_33021
Enzymes [BR:
tvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TRAVEDRAFT_33021
Transcription machinery [BR:
tvs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TRAVEDRAFT_33021
DNA repair and recombination proteins [BR:
tvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TRAVEDRAFT_33021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
MRNIP
Motif
Other DBs
NCBI-GeneID:
19413756
NCBI-ProteinID:
XP_008031954
JGI:
33021
LinkDB
All DBs
Position
Unknown
AA seq
1231 aa
AA seq
DB search
MSQDFEATQASFYDDGYGMDGEGAGEDYEEITQEDCWTVISSFFDQKGLVRQQLDSFDEF
VQNTMQELVDENADLILDQADQHTGHESDVTRRYEIKFGQIYLSRPTVTEADGSVVPIFP
QEARLRNLTYSAPLYIEMKKRVLLGREDPDSATGDMVWETEHDDNPEDTRKVWIGKVPIM
LRSTFCILHGLEDDELYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSP
ISFLAEIRSAVEKGGKTISQFQVKLYHRSQERSLGNVMKATIPYIKVDIPIWVVFRALGV
ISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRERRLRY
AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP
LLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSLATGNWGDQKK
TMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ
ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTPCTKVFVNGVWMGVHRD
PANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHI
ENLARGKEEPEKDATKFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGI
DPHENDGELDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG
KQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAVVAILCYSGYN
QEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLE
DDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLI
TTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINP
HAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYH
GHTGRKIQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEME
RDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACRNKTACSQIY
IPYAAKLLFQELQSMNIAARLYTTSTGRIRD
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagactttgaagccacgcaggcgtcgttctatgatgatgggtatggcatggac
ggtgaaggcgcaggcgaggactacgaggagatcacccaggaagattgctggacggtcatc
tcaagcttcttcgatcagaagggtctcgtgcggcagcagctggactcgttcgacgagttc
gtccagaataccatgcaagaacttgtcgatgaaaacgcggacctcattctcgatcaggcg
gaccaacatacaggtcatgaatccgatgtcactcgccgctacgagatcaagtttggacag
atttacctctcgagaccgactgtcacggaggcagacggctctgtcgtccctatattccct
caagaagcccgtttgcggaatctcacctactccgcaccgctatacatcgagatgaagaag
cgcgtacttctggggcgggaggacccggacagtgccaccggggacatggtctgggagact
gagcacgatgacaaccctgaggacacacgaaaagtgtggataggaaaggtccccatcatg
cttcggtccacgttttgcatcttgcacggtcttgaggacgacgaactctacgatctcaat
gagtgcccgtatgattctggaggatacttcatcattaacggctcggagaaggtgctcatt
gcccaggagcgcatggccaccaaccacgtatacgtcttcgcgaaagcgcaaccctccccc
atcagtttccttgccgagattcgtagcgccgtcgagaagggtggaaagacgatcagtcag
ttccaagtgaagctttatcatcgaagccaggagcgttcgctcgggaacgtcatgaaggct
accattccctacatcaaggtcgacatcccgatctgggtggtgttccgtgcactcggcgtg
atctccgaccgtgacattttggaacatatttgctacgacatgcaggacaaccagatgttg
gagatgctcaagccgtgtatagacgagggtttcgttatccaggaccgcgagattgcactg
gactacatcggtaatcgtggaactacgactggtctcaaccgtgagcgacgtctgcgctat
gctcaggagattctgcagaaggagatgcttccccatgtctcgatggccgaaggttcggag
tccaagaaagcctacttcttcggctacatgatccatcgtctcctgcttgcggccctcgag
cggagggaccttgacgatcgtgatcatttcggaaagaagcgtctcgatcttgccggccct
ctcttagcgaacctcttccgtatgctgttccgcaagctgacgaaggatgtctaccgctac
ctccagaagtgcgttgagacccacaaggagttccagttgggcctcgctgtgaagcacaac
accatcacgaacggactgaagtactcccttgccaccggcaactggggagaccagaagaag
accatgtcgtccaaggctggtgtctctcaggtgctcaaccgatacacatacgcctctacg
ttgtcgcatttgcgtcggtgtaacactcctctcggtcgtgaaggcaagatcgccaagccc
cgtcagctccacaacacccactggggaatggtctgccctgcggaaacgccggaaggacag
gcttgtggcctcgtcaagaacttgtcgctcatgtcttgcatctctgtcggttcgctctcc
gcgccagtcatcgagttcttggaggagtgggggctggagtccctggaggagaacgcacat
tcgtcgacgccctgcacaaaggtgttcgtcaacggagtctggatgggtgtgcaccgcgac
cctgcaaacctcgtcaagacaatcaagaagctgcgtcggaaggacgacattagtgccgag
gtctccgtggtccgcgacatccgcgagcgcgagctccgtctctacaccgacgccggacgt
gtctgccgtccactcttcattgtcgaaaaccagcagctgcttctgcagaagaagcacatt
gaaaacctcgctcgcgggaaggaggaacccgagaaggatgcaaccaagttcgagtacaag
tgggacaacctgatcaaggacggtgtcatcgagctcttggatgcggaggaagaggagacc
gtcatgatctgcatgacgccggaggacctcgagaactccaggctgcagtcggcgggcatc
gaccctcacgagaacgacggcgagcttgacccgtctgcccgcctgaaggcgccgacgaac
gcgcatacttggacacattgcgagattcatcctagcatgatcttgggtgtttgtgctagt
atcattcctttccccgatcacaaccagtccccccgtaacacctaccagtctgccatgggt
aaacaggcgatgggtatctacctaacgaacttcctcgtgcgcatggacaccatggcgaac
attctctactacccccagaagccccttgcgaccacgcgttccatggagtacctcaagttc
cgcgaactgcccgctggccagaacgccgttgtcgccattctgtgctacagcggttacaac
caggaagattccgtcatcatgaaccagagctctatcgaccgaggtctctttcggagtatg
tactaccggagctacatggacctcgagaagaagagcggtatccagcagctggaggagttc
gagaagccgacgcgcgactcgacgctgcggatgaagcacggcacgtatgacaagctggag
gacgatggtctcatcgcgcccggcacgaatgtcaacggcgaggacatcatcatcggcaag
accgcgcccatcccgcccgacagcgaggagctcggccagcgcacgcggacgcacacgaag
cgcgacgtctcgacaccgctcaagagcacggagcagggtatcatcgaccaggtgctcatc
acgacgaacgcggagggccagaagtttgtgaagatccgtgtccgctcgacgcgtatcccc
cagatcggcgacaagttcgcctcgcgtcacgggcagaagggtaccatcggtatcacctac
cgccaggaggacatgccgttcacggcggagggcatcacgcccgacatcatcatcaacccg
cacgctattccttcccgtatgaccatcgggcatttggtcgagtgtctgctctcgaaggtc
gcgacgctcatcggaaacgagggcgacgcgacgccgttcacggaccttaccgtcgagtcc
gtctcgcagttcctccgccagaagggctaccagtcgcgtgggctcgagatcatgtaccac
ggccacaccgggcgcaagatccaggcgcaggtgtacctcggcccgacgtactaccagcgg
ctgaagcacatggtcgacgacaagatccactcgcgtgcccgtgggcccgtgcagatcctc
acgcgccagccggtcgagggtcgtagtcgtgacggtggcctgcggttcggagagatggag
cgcgactgcatgatctcgcatggtgtggctgcgttcttgaaggagcgtctgttcgaggcg
agcgatgcctatcgtctgcatgtttgcgacatttgcggtcttacggctattgccaacctc
aaaaagcaaaccttcgaatgccgcgcgtgcaggaacaagactgcgtgttcacagatctac
atcccttatgccgcgaagctcctgttccaggaactgcaaagcatgaacatcgcagcccgc
ttgtacacgacgtcgacgggtcgtatcagggattaa
DBGET
integrated database retrieval system