KEGG   Trametes versicolor: TRAVEDRAFT_33021
Entry
TRAVEDRAFT_33021  CDS       T04795                                 
Name
(RefSeq) DNA-dependent RNA polymerase II second largest subunit
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
tvs  Trametes versicolor
Pathway
tvs03020  RNA polymerase
tvs03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tvs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TRAVEDRAFT_33021
  09124 Replication and repair
   03420 Nucleotide excision repair
    TRAVEDRAFT_33021
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tvs03021]
    TRAVEDRAFT_33021
   03400 DNA repair and recombination proteins [BR:tvs03400]
    TRAVEDRAFT_33021
Enzymes [BR:tvs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TRAVEDRAFT_33021
Transcription machinery [BR:tvs03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     TRAVEDRAFT_33021
DNA repair and recombination proteins [BR:tvs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TRAVEDRAFT_33021
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_3 MRNIP
Other DBs
NCBI-GeneID: 19413756
NCBI-ProteinID: XP_008031954
JGI: 33021
LinkDB
Position
Unknown
AA seq 1231 aa
MSQDFEATQASFYDDGYGMDGEGAGEDYEEITQEDCWTVISSFFDQKGLVRQQLDSFDEF
VQNTMQELVDENADLILDQADQHTGHESDVTRRYEIKFGQIYLSRPTVTEADGSVVPIFP
QEARLRNLTYSAPLYIEMKKRVLLGREDPDSATGDMVWETEHDDNPEDTRKVWIGKVPIM
LRSTFCILHGLEDDELYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSP
ISFLAEIRSAVEKGGKTISQFQVKLYHRSQERSLGNVMKATIPYIKVDIPIWVVFRALGV
ISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRERRLRY
AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP
LLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSLATGNWGDQKK
TMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ
ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTPCTKVFVNGVWMGVHRD
PANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHI
ENLARGKEEPEKDATKFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGI
DPHENDGELDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG
KQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAVVAILCYSGYN
QEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLE
DDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLI
TTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINP
HAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYH
GHTGRKIQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEME
RDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACRNKTACSQIY
IPYAAKLLFQELQSMNIAARLYTTSTGRIRD
NT seq 3696 nt   +upstreamnt  +downstreamnt
atgagccaagactttgaagccacgcaggcgtcgttctatgatgatgggtatggcatggac
ggtgaaggcgcaggcgaggactacgaggagatcacccaggaagattgctggacggtcatc
tcaagcttcttcgatcagaagggtctcgtgcggcagcagctggactcgttcgacgagttc
gtccagaataccatgcaagaacttgtcgatgaaaacgcggacctcattctcgatcaggcg
gaccaacatacaggtcatgaatccgatgtcactcgccgctacgagatcaagtttggacag
atttacctctcgagaccgactgtcacggaggcagacggctctgtcgtccctatattccct
caagaagcccgtttgcggaatctcacctactccgcaccgctatacatcgagatgaagaag
cgcgtacttctggggcgggaggacccggacagtgccaccggggacatggtctgggagact
gagcacgatgacaaccctgaggacacacgaaaagtgtggataggaaaggtccccatcatg
cttcggtccacgttttgcatcttgcacggtcttgaggacgacgaactctacgatctcaat
gagtgcccgtatgattctggaggatacttcatcattaacggctcggagaaggtgctcatt
gcccaggagcgcatggccaccaaccacgtatacgtcttcgcgaaagcgcaaccctccccc
atcagtttccttgccgagattcgtagcgccgtcgagaagggtggaaagacgatcagtcag
ttccaagtgaagctttatcatcgaagccaggagcgttcgctcgggaacgtcatgaaggct
accattccctacatcaaggtcgacatcccgatctgggtggtgttccgtgcactcggcgtg
atctccgaccgtgacattttggaacatatttgctacgacatgcaggacaaccagatgttg
gagatgctcaagccgtgtatagacgagggtttcgttatccaggaccgcgagattgcactg
gactacatcggtaatcgtggaactacgactggtctcaaccgtgagcgacgtctgcgctat
gctcaggagattctgcagaaggagatgcttccccatgtctcgatggccgaaggttcggag
tccaagaaagcctacttcttcggctacatgatccatcgtctcctgcttgcggccctcgag
cggagggaccttgacgatcgtgatcatttcggaaagaagcgtctcgatcttgccggccct
ctcttagcgaacctcttccgtatgctgttccgcaagctgacgaaggatgtctaccgctac
ctccagaagtgcgttgagacccacaaggagttccagttgggcctcgctgtgaagcacaac
accatcacgaacggactgaagtactcccttgccaccggcaactggggagaccagaagaag
accatgtcgtccaaggctggtgtctctcaggtgctcaaccgatacacatacgcctctacg
ttgtcgcatttgcgtcggtgtaacactcctctcggtcgtgaaggcaagatcgccaagccc
cgtcagctccacaacacccactggggaatggtctgccctgcggaaacgccggaaggacag
gcttgtggcctcgtcaagaacttgtcgctcatgtcttgcatctctgtcggttcgctctcc
gcgccagtcatcgagttcttggaggagtgggggctggagtccctggaggagaacgcacat
tcgtcgacgccctgcacaaaggtgttcgtcaacggagtctggatgggtgtgcaccgcgac
cctgcaaacctcgtcaagacaatcaagaagctgcgtcggaaggacgacattagtgccgag
gtctccgtggtccgcgacatccgcgagcgcgagctccgtctctacaccgacgccggacgt
gtctgccgtccactcttcattgtcgaaaaccagcagctgcttctgcagaagaagcacatt
gaaaacctcgctcgcgggaaggaggaacccgagaaggatgcaaccaagttcgagtacaag
tgggacaacctgatcaaggacggtgtcatcgagctcttggatgcggaggaagaggagacc
gtcatgatctgcatgacgccggaggacctcgagaactccaggctgcagtcggcgggcatc
gaccctcacgagaacgacggcgagcttgacccgtctgcccgcctgaaggcgccgacgaac
gcgcatacttggacacattgcgagattcatcctagcatgatcttgggtgtttgtgctagt
atcattcctttccccgatcacaaccagtccccccgtaacacctaccagtctgccatgggt
aaacaggcgatgggtatctacctaacgaacttcctcgtgcgcatggacaccatggcgaac
attctctactacccccagaagccccttgcgaccacgcgttccatggagtacctcaagttc
cgcgaactgcccgctggccagaacgccgttgtcgccattctgtgctacagcggttacaac
caggaagattccgtcatcatgaaccagagctctatcgaccgaggtctctttcggagtatg
tactaccggagctacatggacctcgagaagaagagcggtatccagcagctggaggagttc
gagaagccgacgcgcgactcgacgctgcggatgaagcacggcacgtatgacaagctggag
gacgatggtctcatcgcgcccggcacgaatgtcaacggcgaggacatcatcatcggcaag
accgcgcccatcccgcccgacagcgaggagctcggccagcgcacgcggacgcacacgaag
cgcgacgtctcgacaccgctcaagagcacggagcagggtatcatcgaccaggtgctcatc
acgacgaacgcggagggccagaagtttgtgaagatccgtgtccgctcgacgcgtatcccc
cagatcggcgacaagttcgcctcgcgtcacgggcagaagggtaccatcggtatcacctac
cgccaggaggacatgccgttcacggcggagggcatcacgcccgacatcatcatcaacccg
cacgctattccttcccgtatgaccatcgggcatttggtcgagtgtctgctctcgaaggtc
gcgacgctcatcggaaacgagggcgacgcgacgccgttcacggaccttaccgtcgagtcc
gtctcgcagttcctccgccagaagggctaccagtcgcgtgggctcgagatcatgtaccac
ggccacaccgggcgcaagatccaggcgcaggtgtacctcggcccgacgtactaccagcgg
ctgaagcacatggtcgacgacaagatccactcgcgtgcccgtgggcccgtgcagatcctc
acgcgccagccggtcgagggtcgtagtcgtgacggtggcctgcggttcggagagatggag
cgcgactgcatgatctcgcatggtgtggctgcgttcttgaaggagcgtctgttcgaggcg
agcgatgcctatcgtctgcatgtttgcgacatttgcggtcttacggctattgccaacctc
aaaaagcaaaccttcgaatgccgcgcgtgcaggaacaagactgcgtgttcacagatctac
atcccttatgccgcgaagctcctgttccaggaactgcaaagcatgaacatcgcagcccgc
ttgtacacgacgtcgacgggtcgtatcagggattaa

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