KEGG   Trametes versicolor: TRAVEDRAFT_43599Help
Entry
TRAVEDRAFT_43599  CDS       T04795                                 

Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tvs  Trametes versicolor
Pathway
tvs03030  DNA replication
tvs03410  Base excision repair
tvs03420  Nucleotide excision repair
tvs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tvs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TRAVEDRAFT_43599
   03410 Base excision repair
    TRAVEDRAFT_43599
   03420 Nucleotide excision repair
    TRAVEDRAFT_43599
   03430 Mismatch repair
    TRAVEDRAFT_43599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tvs03032]
    TRAVEDRAFT_43599
   03400 DNA repair and recombination proteins [BR:tvs03400]
    TRAVEDRAFT_43599
Enzymes [BR:tvs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TRAVEDRAFT_43599
    6.5.1.6  DNA ligase (ATP or NAD+)
     TRAVEDRAFT_43599
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TRAVEDRAFT_43599
DNA replication proteins [BR:tvs03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    TRAVEDRAFT_43599
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     TRAVEDRAFT_43599
DNA repair and recombination proteins [BR:tvs03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TRAVEDRAFT_43599
   NER (nucleotide excision repair)
    Other NER factors
     TRAVEDRAFT_43599
   MMR (mismatch excision repair)
    Other MMR factors
     TRAVEDRAFT_43599
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 19414866
NCBI-ProteinID: XP_008033883
JGI: 43599
LinkDB All DBs
Position
Unknown
AA seq 1014 aa AA seqDB search
MSKRTLVSPSASPSRQKKKAKVTTGQARLDTFFGASSSRTPVPASQSSSNVPSPKAASST
GRKEQAKRPLTDEELAWALAAEDGLDLEALRKLEAKNGALPSSNLSTVTPREDPHPEVID
VDQLDDAPQQNVPGPSSRPAKPSTPASLRTTHPGKRLVSAAGHKQTIGSVSRASVPGETS
AVPCVEVSSAAEGVAAEALRKLNAHGGLGAATGSLSATLPCEETHSAVIDVEQLEHIPQE
NDPGPSSRLSPPTKLTTPTSALVTHPPERSPVSGSKHTIGNAKPSATPSYNPLDVDSPSY
RLDCAAWPPNAPVPYSFLTHALATLSGTRSRIAKLDTLTNALRTISHQHPPSLLPALYLL
SNTLSPPYSPIELGLGPSIISKAIQHVSGLSSAALKRLYNSTGDPGDVAFEAKSNVRTLI
PHPPLLIIGVYDALIKIAGAKGSGAAKTKQAVVEKLLVAAKGEETRFLVRTLCQNLRVGA
VRTSLAALARATVLNPPPAVSAALTSDSTFHISLETLAAIKPLVGKKKVPDDARDALNAI
FALAEGAIKRVYVQHPNYDHIVRALLEGGLEGLADRLPLTIGVPLLPTLGSPTRSLDEIY
DRLGLLPFTAEFKYDGQRAQIHASRGLGSKHTVKIFSRHLEDMTDKYPDVVSLVGEMLDA
APQTQSFIIDSEVVAVDPATGELKTFQELSNRARKDVKLDDVKVAVCVFAFDVMFLDGQV
LIERPFRERRSLLRTRFPAYTPPQKGAARFDHVRSVESEDGREAVEEFWQAAVNSSSEGL
MVKLLDSGEVLEEPTQNKERPRRKPLPATYEPDKRTSAWLKLKKDYVVGLGDSLDLVPIG
AWHGNGRKVQWWSPILLAVWDPTAEKLVAVCKCMSGFTDAFYKSLHERYPENSDTCSSHP
LWQPECDTGGLRPEVYFKPQEVWEIRGADITISPVSVAALGLVSQTRGLSLRFPRFISIR
EDKGIENASDPEFLAKMYRDQQSAGKDQTGADEGELVDVDLDEGPPEDEDEESS
NT seq 3045 nt NT seq  +upstreamnt  +downstreamnt
atgtccaaacgtaccctagtgtcaccctcggcatcaccgagccgtcaaaaaaagaaagcc
aaagtcacgacaggacaagcccggcttgatacattcttcggcgcctcgtccagtcggacg
ccagtgccagctagccaatcttcgtcgaacgttccctcccccaaagctgccagctcaacc
ggcaggaaggaacaagcgaagcgtcctctgacagatgaggagctcgcctgggcactagcg
gcggaggacggtctcgacttggaagcgctccgcaaactcgaggcaaagaatggagcactg
ccctctagcaacctgtcaacggtcacgcctcgcgaggacccacaccccgaggtgatagac
gtcgaccaacttgacgacgctccacagcagaatgtccctggtccgtccagtcggcctgct
aaaccttcaacaccggcgtctcttcgtacgacacacccagggaaacgtctagtttccgcg
gcgggccacaaacagaccattggcagcgtctcgcgggcctctgtgccaggagaaacctct
gccgtcccgtgtgtagaagtctcttcagctgctgagggtgtcgccgcggaagcgctccgc
aaattgaacgcgcacggcggactcggagcagctactggtagtctgtcagcgactctgccc
tgcgaggagacgcattctgcggtgattgacgttgaacaacttgaacatatcccgcaagag
aacgaccctggtccctctagtcgcctttctccgcccactaaacttacgacgccgacctct
gcccttgtgacacaccctccggagcgctctcccgtctcgggctctaaacatactattggc
aatgccaagccgtccgctacgccatcttacaaccctcttgacgtcgactcgcctagctac
cgtctggactgcgctgcatggcctcccaacgcgccggtaccatactcattcctcacccac
gcccttgctacactctctgggacgcgctcgcggatcgccaagttagacactctgacgaac
gctctccgtactatcagccaccagcaccctccgtcactgcttccggcactatacctgtta
tcaaataccctttcgccgccttattcccccattgaattgggcctcgggccgtccataatc
tctaaagccatccagcatgtttcaggactctcttctgccgcgttaaagcgtctctacaat
tcaaccggcgatccaggggacgtggcgtttgaggcaaaatccaatgtacgaacgctaatt
ccgcaccctcctcttcttatcatcggcgtatacgacgccttgataaaaatcgctggagcg
aagggttcgggcgccgcaaagactaaacaagcggtcgtcgagaagctgttagtcgctgcc
aaaggggaagagacgcgattcctcgtacgcaccctttgccagaacctccgcgtgggtgcc
gtacggacgtctttggcagccctggcccgggcgacggtcctcaaccctccgcccgcagtc
tctgcggcgttaaccagtgactcgacatttcatattagtctagagactcttgctgccata
aaaccacttgttggcaagaagaaggtccccgacgacgcccgggacgcactgaatgcaatc
ttcgccctggctgagggcgctatcaaacgggtctacgttcagcaccccaactacgatcat
atcgtgcgcgcgctgctcgaaggcggtttagaaggcctcgcggaccgcctccctctgacg
atcggtgtcccattactcccgaccctagggtcccctacgcggtccctggatgagatctac
gatcgcctcgggctgctgcctttcacggcagagttcaagtatgacggtcagcgcgcccag
attcacgcatcaaggggcctgggctctaaacacacggtgaaaatattctcgcggcatctc
gaggacatgaccgacaagtacccggacgtggtgtcattggtcggcgagatgctggacgcc
gcgccgcagacgcagtccttcatcatcgactccgaggtcgtcgccgtggaccccgccacc
ggggagctgaagacgttccaggagctgtcgaaccgcgcgcgcaaggacgtcaagctcgac
gacgtcaaggtcgccgtgtgcgtgttcgccttcgacgtaatgttcctggacggtcaggtc
ctaatagaacggccgttccgcgagcgccgatcgcttctccgcacacgcttccccgcgtac
accccgccacagaagggcgcggcgcgcttcgaccacgtcagaagcgtcgagagcgaggac
gggagggaagccgtcgaggagttctggcaggcggcggtgaacagctcgagcgaagggctg
atggtcaagcttcttgatagcggagaggttttggaagaacctacccagaataaagagaga
ccgcggaggaagccccttcctgccacatacgaaccagataaacggacgtccgcgtggctg
aagctcaagaaggactacgtcgtcgggctcggtgacagccttgatctcgttcccatcggc
gcatggcatggcaacgggcgaaaggtgcagtggtggagcccgatcctgctggccgtctgg
gatcccaccgcggagaagctcgtggcagtgtgcaagtgcatgtcgggcttcacggacgcg
ttctacaagagcttgcacgagcggtaccccgaaaattcggacacctgttcctcgcaccca
ctatggcagcccgagtgtgatacgggaggacttaggccggaggtgtactttaagccgcaa
gaggtgtgggagatacgaggcgctgacatcactataagccccgtgtcggttgccgcgcta
ggactcgtgtcccaaacgagaggactcagtctccgatttccgcggttcatatccatccgg
gaggacaaagggatcgagaacgcgagcgacccggaatttcttgcgaagatgtatcgtgat
cagcaatctgctgggaaggaccagaccggcgccgatgaaggggagctcgtggatgtcgat
ctagacgaggggccgccggaggacgaggacgaagagtcgtcgtag

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