Thermoactinomyces vulgaris: AB849_006000
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Entry
AB849_006000 CDS
T05864
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
tvu
Thermoactinomyces vulgaris
Pathway
tvu02020
Two-component system
tvu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tvu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AB849_006000 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AB849_006000 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvu03021
]
AB849_006000 (rpoN)
Transcription machinery [BR:
tvu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AB849_006000 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
HTH_IclR
HTH_21
Arg_repressor
HTH_Crp_2
Sigma70_r4
HTH_12
HTH_32
HTH_20
HTH_Tnp_ISL3
MarR
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
QBK13193
LinkDB
All DBs
Position
1157644..1159005
Genome browser
AA seq
453 aa
AA seq
DB search
MALQVGFGLIQEQRMKMVMTPELRQAIQILQFSATDLRKYIEDQMMENPVLNVSEAEKKE
PDLDRWMEYMRDLPRQSRIGYRKEPDEPSFESFVTGHQTLADELEAQLCEYSLTLKERKV
CLYLIHNLDEKGYLDLGSGEACKRLHIDGGMFAKCLKVIQSMEPAGVGARSLGECVELQL
CRRESVNETAIRIAREHLRDVADAKWRKIADALQVDLSEVYRAVEEIKSCNPKPGLQFHS
SPPRYVSPDVYVEKMEDEYVILLNEGDMPNLTVNRYYQQLLRQKDELGEEVSRYLKNWVQ
SALWLMKGIEQRRDTIYRVAQAIVKRQRDFFELGVDHLKPLTLKQIAEEVDLHESTVSRA
TQHKYMQTPNGLFPFRFFFPSGLQTDTGVDMAQSAVQKKIRQMIENEDKAKPLSDQKIAD
LLKAEGVSISRRTVAKYRDEMGIASSAKRKRFL
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggctctgcaagtgggttttggcttgattcaggaacagcggatgaagatggtgatgacc
ccggaactgcgccaagcgattcagattttgcaattctccgcaaccgatttgcgaaaatat
atagaagaccaaatgatggaaaacccggttttgaatgtttccgaagcagagaaaaaagag
ccggatttggaccggtggatggagtatatgcgtgacttgccccggcaaagcaggatcggc
taccggaaagaaccggacgaaccgtcgtttgagtcttttgtcacgggacatcaaacgctg
gccgatgaattggaagcgcaactttgcgagtattccctgactttaaaagaacggaaggtt
tgtttgtatttgattcacaatctggatgaaaagggatatttggatttgggttccggtgaa
gcatgtaagcgcttgcatatcgatggcgggatgtttgcaaagtgtttgaaggtgattcaa
tcgatggagccggctggtgtgggtgcccgctcgctgggagaatgtgtggagctgcagttg
tgccggcgggagagtgtcaatgaaacagccatccgcattgcccgggagcatttgcgggat
gtggcggatgccaaatggcgcaagatcgccgatgccttgcaagtggatctgagtgaagtg
tatcgtgcggtggaagagattaaatcgtgcaatcccaaacccggtcttcaatttcattca
tctcctccccgttatgtgtcaccggatgtgtatgtcgagaaaatggaggatgaatacgtg
attctcctgaatgaaggggatatgccgaatctgaccgtgaaccggtattatcagcaattg
ttgcggcaaaaagatgaattgggcgaagaggttagccggtatctgaaaaactgggtgcag
tccgctttgtggctgatgaaggggattgagcagcgcagagacaccatctaccgtgttgcc
caagccattgtgaagcggcagcgtgacttttttgagctcggggttgatcatttgaagccg
cttacattgaagcaaattgccgaagaagtcgatctccatgaatcgacggtcagccgggcg
acccagcataaatacatgcagacgccaaacggtttgtttccgttccgttttttctttcct
tccggcttacagaccgataccggagtggacatggcgcaaagtgcggtgcagaaaaaaatc
cggcaaatgattgaaaacgaggataaagccaagccgttatccgatcagaagattgcggat
ctgttgaaggcagagggggtttcgatttcccggcgcaccgtggccaaataccgggatgaa
atgggaatcgcatcatctgcaaaacgaaagcgttttctgtga
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