Thermoactinomyces vulgaris: AB849_011655
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Entry
AB849_011655 CDS
T05864
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tvu
Thermoactinomyces vulgaris
Pathway
tvu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB849_011655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvu03400
]
AB849_011655
Enzymes [BR:
tvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB849_011655
DNA repair and recombination proteins [BR:
tvu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB849_011655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QBK14198
LinkDB
All DBs
Position
2286619..2287560
Genome browser
AA seq
313 aa
AA seq
DB search
MDLKPIIPFEPVTTDDFPQGKQWIAQVKWDGVRILAYRNRNEIKLFNRKKNERTFHYPEL
QHLDQSLRAKSAILDGEVIALKDGKPSFYEVMKRDGLRNIDRVLTVQKQVPVTYMVFDLL
YLDGQWIIHRPLSERTALLHEICESSGPVQLVPSYEDGKALFEAVKEHGLEGIVFKDQNS
TYAIGGKDHRWQKKKNMQDLIAVVGGVVVRDSVARSLLLGLYDEKDRLWYIGHAGTGKLT
HEDWKTLTRMIQPVVQENMPFVNPPSRMKNTLWLKPAITVKVEYLEWSHGHTLRQPSIQA
FVTHPPRQCRFDQ
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaagccaatcatcccgtttgaaccggtaacaacggatgacttcccgcaagga
aaacaatggatcgcgcaagtgaaatgggacggcgtccgcatcctggcataccggaacaga
aacgaaatcaaactttttaaccgcaaaaaaaatgaacggacgtttcattatcccgagctt
cagcatttggatcaatccttaagagccaaatcggcaatattggacggggaagtcatcgca
ttaaaagacgggaaaccttctttttatgaagtgatgaaaagagacggccttcgtaatatc
gaccgggttttgaccgtgcaaaaacaagttccggttacatatatggttttcgacctgtta
tacttggacggccaatggatcatccaccggccactttcggaaagaaccgcgttgcttcat
gaaatctgcgaatcttccggtcctgttcagctcgtcccctcttatgaagatggaaaagcg
ctgtttgaagccgtgaaagaacacggcttggaaggaatcgttttcaaagaccaaaacagc
acctatgccatcggcgggaaagatcaccgctggcagaagaaaaaaaatatgcaagatttg
attgcggtggtggggggcgtcgttgtacgcgattccgtggcccgttcccttctgctcgga
ttatatgatgaaaaggaccggctttggtatatcggacacgcaggaaccggcaaattgact
cacgaagattggaaaacgctgacccgcatgattcaacctgttgtgcaggagaacatgcct
tttgtcaatccgccttcccggatgaaaaacacactttggctgaagccggccatcacggtg
aaagttgaatacttggaatggagccacggacacacattgagacagccgagcattcaggct
ttcgtgacccatcctccccgccaatgccgcttcgaccaataa
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