Tropheryma whipplei TW08/27: TW589
Help
Entry
TW589 CDS
T00117
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tws
Tropheryma whipplei TW08/27
Pathway
tws03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TW589 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tws03400
]
TW589 (mfd)
Enzymes [BR:
tws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TW589 (mfd)
DNA repair and recombination proteins [BR:
tws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TW589 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
CAD67255
LinkDB
All DBs
Position
complement(662858..666604)
Genome browser
AA seq
1248 aa
AA seq
DB search
MNLLAAIEAFIPTGFAATACPGGFSACKVASLVGDVDSLLVILPSEDACFTDTLRTYLPE
SIILNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKNNKRAKNAQTSKTLHDIGILE
DNLPTIHQKLVVVASIKAFMQPIISDGNPPCLYFHTGGEYELSEIANILVAMSYSRTDLV
GARGEFAIRGGILDIYPPTEKHPIRIEFFGRQLESMRHFRVSDQRSIGPYVSNNAHVGMF
AQYQDNSVCKCNVSLSSNPHRCASHLSINNTYKPSAVMAPASEALIVYPTSEFPEEDQIN
NITPKSLLHFMPGKSTVVVIKCEQLTSKIEQLINTNREFSEAFCTPDAFSATNKYARNNH
DGDNTLDGIAEKINYYTLEGLRHFAADLGIGWTDLSGFNSEDEKSLITANPDFSGYSVFD
HIRNLQKSGWQIVLASTNNRVYPTLDEYGIDYLILSANTDYSSFEECRECSTRQESPQVM
CTPSITQSCTHDRTGAQQKSYISDLFFKQADPDAVDSGLIKHRVVVIDSYIQEGFSVPTK
SFTLIGEHELFGKTTLQKAPRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDA
PEQEYLILEYAKNRLGVADKLYIPTDQLSMISKYIGSDRPTLSRIGGSDWALTKSRARKA
ISSIALDLVKLYSRRSITKGYAFSPDTPFQTHFENEFLYTETRDQEKTIVAVKADMENSK
PMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAVLVPTTLLARQHIQTFCERFDKWPVTI
ASLSRFQSKSEIQKTICGISSGGIDIVIGTHMLLNKKIQFKDLGLLIIDEEHRFGVNHKE
AIKKLKIGIDILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIA
AVRREIIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERMLEKTVIDFWEG
KYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQLRGRVGRGTKRAYAYLFYTSTL
KDTAYKRLEAIARNNHLGAGAQIAMKDLELRGAGSLLGHAQSGHIASVGFDLYIRMVTDA
ISNFKGEQSRTNNLRLEIPVDASIPKAYVDSERLRIELYKKISEALSDADIKDIGDEILD
RFGNLPSQVINLLELARLRILASSRGIDLITLKSDFRQGGDVVTVSPVSFSDTAHQNLLR
DGQFSFICYRNSKLSACINRSSSEHSGYSEHSRQIINSIRHFIITSCN
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttactggcagccatagaggcatttattccaacagggtttgctgcaacagcatgc
ccgggcgggttttccgcgtgtaaggttgccagtcttgttggtgatgttgatagcctactt
gtaattctcccgagtgaagatgcttgcttcaccgacacactgcgcacatacttgcccgag
tctattattctgaattttccagaatgggacaccctattacacgagcaaatcagcccgagt
cctgagcgtgtttctgccagaatggaggcgttacacaagatctccttattccgtaaaaat
aataagcgtgctaaaaacgcccagacaagcaaaaccttgcatgacattggcattctggaa
gataatctgcccaccatacaccaaaagcttgttgtcgttgcatctatcaaggcattcatg
cagcccattatttcggacggaaatccgccctgtctttactttcatactgggggcgagtat
gaattgtcagaaattgcaaacattcttgttgcaatgtcgtattcaagaactgatcttgtt
ggggcaaggggtgagtttgcaataagaggtggcatcctcgacatctatcctcccaccgag
aaacacccgatcagaatcgagttctttggtcggcagctcgagagtatgcgtcacttccgt
gtttcagatcaacgctcaatagggccttatgtatccaataatgctcacgttggcatgttt
gcacaatatcaggataattcggtatgtaagtgtaatgtctcattaagctctaatccgcat
agatgcgcctcacatttatccattaacaatacatataaacccagtgcggtaatggcccca
gcttcagaagcacttattgtatatccaacaagtgagtttcctgaagaagatcaaatcaat
aacatcaccccaaaatccctgctgcattttatgcctggaaaatctacagtcgtagttata
aaatgcgaacaattaacgtctaagatagagcagctcataaacacaaaccgggagttttcc
gaggctttttgtacgccagacgctttttctgcaactaataaatatgctcgaaataatcat
gatggtgataataccctcgacggtattgccgaaaaaataaattactacaccttagaagga
cttcgtcattttgcagcggatctaggcatcggttggactgacttatccggttttaacagc
gaagatgaaaaatcacttattacggccaatccagatttttctggatattcggtatttgat
catattcgaaacctacaaaaatctggatggcaaattgtgctcgcttcaacaaataacagg
gtatatcccacgctcgatgaatacgggattgattacctgatattgtcagcgaacactgat
tattcctcgtttgaggagtgcagggagtgttctacaagacaggagagtccacaggtaatg
tgcacccctagcattacacagagctgcacgcatgaccgcacaggcgcgcagcaaaaatcg
tatatatctgatttgttttttaaacaagcagatcctgacgcagttgattcagggctaata
aagcatagggttgttgtaattgattcgtatatacaagagggtttttcagtcccgacaaaa
tccttcacactgattggcgaacatgaattatttggcaaaaccacactccaaaaagccccg
cgcatttcacggcgtgcaatagatccgataaatcttgcaattgatgactatgtggtgcat
gaaatacatggaattgcccgtttcaagggaatgtgctcgcggcgaccaaagcacgatgcc
cccgagcaggaataccttattcttgaatatgcaaaaaacaggcttggcgtagcagacaag
ctttatattccaaccgatcagctgtcaatgataagtaagtatattggctctgataggcca
actttatcgaggattggcggaagcgactgggctctaacaaaatcccgtgcacgtaaagca
atcagtagtattgcgcttgatcttgtaaagctttattctcgccgttcaatcacaaaagga
tacgcattttcgcctgataccccatttcaaacacattttgaaaatgagtttttatacaca
gaaacacgggatcaggaaaaaacaattgtcgcggtaaaggcagatatggaaaattccaaa
cctatggatcgcataataagcggtgatgttggttttggaaaaacagagattgcaatgcgt
gcagcgttcaaggcagtgcaggacaacaaacaggtggctgttctagtgccaacaactctc
cttgcgcgccaacacatccaaactttttgtgagcgttttgataagtggccggtaacaatt
gcctccctcagtcgctttcagtcaaaatctgaaatacagaaaaccatttgcgggatttca
tccggtggaattgatattgtaattggcactcatatgctcttgaataagaaaatacagttc
aaggatcttggtcttttgattattgacgaagagcaccgctttggtgtaaatcacaaagaa
gctataaaaaaactaaaaataggtattgacatattggcaatgagcgccacgccaattccg
cgcacacttgaaatgagtctgatgggcataaaagagatctcgactctatcaacaccccct
gaaaaccgcatgccaatcttgacccatgtcggaccatacagagacaaacaggttattgca
gcagttaggcgagagataattcgtggcggacaggtcttctacatccataacgataccgca
acaatatcaagggtggctcagcgacttgaacaattaattccagaagcccgagtggtttcg
gcacatgcaaaattagccgagcgaatgctagaaaaaacggttattgatttctgggaggga
aagtatgacattcttgtttgcacaacgataatcgaaacaggtcttgataacgcaaatgca
aacacaataattatcgattctgcagaaaattacggcctcagccaattacatcagctcagg
ggtcgtgttggacgaggaactaagagggcatatgcgtatcttttttatacttctacactg
aaagatactgcatacaaacgactggaggcaatagctagaaataaccacctcggtgccggt
gcacaaattgcaatgaaagaccttgagcttcgcggtgccggcagtcttctggggcatgca
cagtcagggcatattgcatctgttgggtttgatctttatatcaggatggtgactgatgcg
atttccaacttcaagggagagcagagtcggacaaataatttacgccttgaaataccggtt
gatgccagtattcccaaagcgtatgttgatagtgaacgcctgcgaatcgagctttataaa
aagatttctgaggcattatctgatgcggatataaaagatattggagacgaaatactggat
cgatttggcaatcttccgagtcaggtaataaacctcctggagttagctagattgcgcata
ctcgcatcttctcgggggatagacctcattacccttaaaagtgattttcgccaagggggt
gatgttgttaccgtatcaccagtaagctttagtgataccgcacaccagaatctattacgg
gatgggcaattctcatttatttgctacaggaattcaaaactttctgcttgtattaaccga
tcttcttctgagcacagtggttattctgagcacagtcgtcaaataataaattcaattaga
cattttattattacctcttgtaattga
DBGET
integrated database retrieval system
