Thalassospira xiamenensis: TH3_10520
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Entry
TH3_10520 CDS
T03639
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
txi
Thalassospira xiamenensis
Pathway
txi03030
DNA replication
txi03430
Mismatch repair
txi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
txi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TH3_10520
03430 Mismatch repair
TH3_10520
03440 Homologous recombination
TH3_10520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
txi03032
]
TH3_10520
03400 DNA repair and recombination proteins [BR:
txi03400
]
TH3_10520
Enzymes [BR:
txi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TH3_10520
DNA replication proteins [BR:
txi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TH3_10520
DNA repair and recombination proteins [BR:
txi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TH3_10520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AJD52220
UniProt:
A0A0B4XZD1
LinkDB
All DBs
Position
complement(2247544..2251086)
Genome browser
AA seq
1180 aa
AA seq
DB search
MIRGGRFPAFAIYRPGFSAMENGFVHLRVHTNYSLAEGAITTKELAKLCEADGQPAVAMT
DTNNMFGALDFSGVMSGSGIQPILGVQIGVERFGDQPVIGKISREPDPDNLVLIAKNDRG
YFNLLKIVSRAHMTSEAGSEPKALYDHIEKYSSDIICLTGGPTGPLARLIAEEQHEAASE
CLNKLSGIFGNRLYIELQRHGEPIEEKVEPGLIRLAYEHNIPMVATNDCFFPKAEMYEAH
DVFICIGQGAVVGQEDRWRLTPEHRFKTAAEMRDLFADIPEACDNTLAIAKRCSWHVEKI
DPILPPFDCGEGRTEVDELRHMSEEGLKGRLAKYVFTEDMTDAQKEEIAKPYWERLEYEL
GIINQMGFPGYFLIVADFIQWAKDHEIPVGPGRGSGAGSLVAYALLITDLDPLHFSLLFE
RFLNPERVSMPDFDVDFCQDRRGEVIEYVQRKYGHDRVAQIITFGKLQAKAAVRDVGRVL
SIPYGYVDKICKMIPGDPAKPIPLKEAIDMEPDLRRIAREDPDIDRLLSIAMQIEGLYRN
SSTHAAGVVIGDRDLDELVPLYRDPRSDMPVTQFNMKYVENAGLVKFDFLGLKTLTVIIE
AVNLMRLRKDVPQGFDISAIPLDDRVAFKLLSAAETVGVFQLESQGMQDVLRGLKPDTIE
DIIAVVALYRPGPMDNIPHYIARKHGTEEPDYMHPMLQPILEETYGIMIYQEQVMQLAQT
MSGYSLGGADLLRRAMGKKIAEEMELQRSLFVDGAEKNGVPRGQASDIFDQVAKFASYGF
NKSHAAAYALVAYQTAYLKANYPVEFMAALMTLDMHNTEKLAIFKQEVERLGIEILPPCI
NNSQVAFSVENHDGVRKIRYALAAVRNVGDAAMESLVAEREANGPFRDLTDFASRIDSRA
VNKRLLENLVRAGALDCLTTNRKVMFEHVDRVMAVAQREMQARNNDQISMFGEDTGFGKD
AIRLPDERDWVPMEKLTEEFSAIGFYLSAHPLDTFGKSLQRIGIAPIKELPARMRAQNKG
SIKLAGTLINAREMISKKNGSKFAFVMFSDPTGSFEVAFWAEAWAAYKEIINAGRPVLLV
VAAEMREGQLRIQGQKVEDLEHAVSGAAEGIRIRLNRPDPVVEIRELLEKAGKGRGLVSL
STVCADGRIAEVELEDTYKVGPSLIGAVGAIPGVELAEEI
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgatccggggtggccggtttcctgcctttgccatttatcgtccgggattttctgcaatg
gaaaacggtttcgtccatcttcgtgttcacaccaactattcgcttgccgaaggtgccatc
acgacgaaggaactggcaaagctgtgcgaggcggatggccagcccgcggttgcgatgacc
gataccaacaacatgttcggcgcgctcgatttttcaggggtgatgagcgggtcgggtatc
cagccgatccttggcgtgcagatcggggtggaacggtttggcgatcagccggtgatcggc
aagatttcacgcgaaccggacccggacaatctggtgctgattgcgaagaatgaccggggg
tatttcaaccttctgaagatcgtttcgcgcgcgcatatgaccagtgaagcgggaagtgag
cccaaggcgctttatgatcatatcgaaaaatacagttccgacatcatctgcctgaccggc
gggccgaccgggccgttggcacgattgattgccgaggagcaacatgaggcggcaagcgaa
tgcctgaacaagctttcggggatatttggcaaccggctttatatcgaattgcagcgccat
ggcgaaccgatcgaagaaaaggtcgagccggggctgatccggctggcctatgagcataat
atcccgatggtcgcgaccaatgactgctttttccccaaggcggaaatgtatgaagcccat
gatgtgttcatctgcatcgggcagggcgcggttgtggggcaggaagaccggtggcgttta
acgcccgaacaccggtttaaaaccgccgccgagatgcgcgatcttttcgccgacattccc
gaggcctgcgacaatacgctggcgattgccaagcggtgttcgtggcatgtcgaaaagatc
gacccgatcctgccgccatttgattgcggcgaaggccgcaccgaggtcgatgagctgcgc
catatgtccgaggagggccttaaaggccgccttgcgaaatatgtctttaccgaggacatg
acggacgcgcagaaggaagaaatcgccaaaccttattgggagcgccttgaatacgagctt
ggcatcatcaatcagatggggtttccgggctacttcctgatcgttgcggactttatccag
tgggcgaaggaccatgaaatcccggtggggccggggcgtggttcgggtgcagggtcgctt
gttgcctatgcacttctgattactgatcttgatccgttgcatttctcgttgctgtttgaa
cgcttcctgaacccggaacgtgtttccatgcccgactttgacgtcgatttctgtcaggac
cggcgcggcgaggtgattgaatatgttcagcgcaaatacggccatgaccgtgtggcgcag
atcatcacattcggtaagttgcaggcaaaggccgcagtgcgcgacgttggccgcgtgttg
agcatcccgtatggctatgtcgataaaatctgtaagatgatcccgggtgatccggccaag
ccgatcccgcttaaggaagccatcgacatggagccggacctgcgccggattgcgcgcgaa
gacccggatattgaccggctgctttccatcgcgatgcagatcgaggggctttatcgtaac
tcgtccacccacgccgccggggttgtgattggcgaccgtgaccttgacgaacttgtgccg
ttgtatcgtgatccgcggtccgatatgccggtgacccagttcaacatgaaatatgttgaa
aatgccggtctggtgaagttcgacttccttggtcttaagactttgacggtgattatcgag
gccgtcaatctaatgcggcttcgtaaagacgtcccgcaaggctttgatatcagtgccatt
ccccttgatgatcgggtggcgttcaagttgctttcggcggccgagacggtcggtgtgttc
cagcttgaatcccagggcatgcaggacgttttgcgcgggcttaagcccgatacgattgaa
gatattatcgcggtcgtggcgctgtatcgtccggggccgatggacaatatcccgcattac
atcgcacgtaagcatggcaccgaagagccggattacatgcacccgatgttgcagccgatc
cttgaagaaacctatggcatcatgatctatcaggaacaggtcatgcagcttgcccagacg
atgtcgggctattcgcttggcggtgcggaccttttgcgtcgtgcgatgggtaaaaagatc
gccgaggaaatggaattgcagcggtcgctgtttgttgacggggcggaaaagaacggggtg
ccacgcgggcaggcgtccgacatctttgatcaggtcgccaagttcgcatcctatggcttt
aacaaatcgcacgcggcggcctatgcgctggtggcgtatcagacggcgtatctcaaggcg
aattatccggtcgaattcatggccgcgctgatgacgcttgatatgcacaacaccgaaaaa
cttgcgattttcaagcaggaggtcgaacgccttggcatcgaaatcctgccgccctgcatc
aataattcgcaagtggcgttttcggtcgaaaatcatgatggggtgcgcaaaatccgttat
gcactggcggccgtgcgcaacgttggtgatgcggcaatggaaagccttgtggcggagcgc
gaggccaatggcccgttccgggacctgaccgattttgcatcgcgcatcgatagccgtgcg
gtcaataaacggttgcttgaaaaccttgtgcgggcaggcgcgcttgattgcctgacgaca
aaccgcaaggtcatgttcgagcatgtcgaccgggtgatggcggttgcccagcgcgaaatg
caggcgcgcaacaatgaccagatttcgatgtttggcgaggataccggatttggcaaggat
gccatacggttgcccgatgaacgcgactgggtgccgatggaaaaactgaccgaggaattt
tcggcgattggtttttacctgtcggcgcatccgcttgatacctttggcaaaagtcttcag
cggatcggtattgcgccgatcaaggagcttccggcccgtatgcgcgcccagaacaaggga
tcgatcaagcttgccgggaccctgatcaatgcgcgtgaaatgatttcgaagaaaaacgga
tcgaaattcgccttcgtgatgttttccgacccgaccggcagctttgaagtcgccttctgg
gccgaggcatgggcggcctataaggaaatcatcaatgccgggcgtccggtgttgctggtg
gtggcggccgaaatgcgcgaagggcagcttcgcattcaggggcagaaggtcgaagacctt
gagcatgccgtttccggggcagccgagggcattcgcattcgcctgaaccggcctgatccg
gtggtggaaatccgagaactgcttgaaaaagcggggaaagggcgcggtctggtcagtctt
tcgactgtctgtgccgatggccgtattgccgaggtcgagcttgaagatacctataaggtc
ggaccgtcgcttatcggggcggtcggggccattccgggggtcgaactggccgaggaaatc
tga
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