Thermoanaerobacterium xylanolyticum: Thexy_1146
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Entry
Thexy_1146 CDS
T01505
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
txy
Thermoanaerobacterium xylanolyticum
Pathway
txy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thexy_1146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
txy03019
]
Thexy_1146
Messenger RNA biogenesis [BR:
txy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thexy_1146
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AEF17179
UniProt:
F6BKZ5
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Position
1222386..1224056
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AA seq
556 aa
AA seq
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MYLTNKTKLKIIPLGGLNEIGKNMTVIEYGNDIIVIDCGLAFPDDEMLGIDLVIPDISYL
LKNKEKVKAIVLTHGHEDHIGALPYVLRQLNVPVYGTRLTLGLVEYKLKENGLLRDSKLV
TVKPRETVTFGQLRVEFIRTSHSIADSAALAIHTPVGVVFHSGDFKIDFTPIGGEVADFH
RFAELGEQGVLVMMCDSTNIERPGYTMSEKTVGDTFDNIFRKAEQRIIVATFASNIHRVQ
QIIDSAYKYGRKVSISGRSMINVINVANELGYLSIPEGTLIDIDEANKLPYGEVVIITTG
SQGEPMSALTRMASSEHKKVEIVPGDTVVISASAIPGNEKLISRVINQLFKKGAEVIYDA
LADVHVSGHACQEEIKLLHTLIRPQFFIPVHGEYRHLKQHAKLAEDLGMDPKNIFIADNG
TVIEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLSQDGLLVVVVTISKEKGS
VIAGPDIISRGFVYVRESEDLMEEAKNLVKETLSQCEKDDITEWSSIKTMIKECLSSFLY
EKTKRNPMILPIIMEI
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgacaaataagacaaaattaaaaatcatacctttgggcgggttaaatgagatc
gggaaaaatatgactgtaattgagtacggaaatgacattattgtcattgactgcggtctt
gcttttcctgatgacgagatgttgggtatagatcttgtcatcccagacatttcgtattta
ttaaaaaacaaagaaaaagttaaagctatcgttttaacgcatgggcatgaagaccatatt
ggagcattgccttatgttttaaggcaattaaatgtgcctgtgtatgggacacgtttgacg
cttggcttagttgagtacaaattaaaagaaaatgggcttttaagagatagcaaattggta
acggtgaaacctcgagagacagtgacgtttgggcaacttagagtagagtttataagaaca
tctcacagcattgctgattcggcagcactggctattcatacacctgttggagttgtattt
cactctggcgattttaagatagactttaccccaattggtggagaagtagctgatttccat
agatttgctgaattaggagaacaaggggttcttgtcatgatgtgtgatagtacaaatata
gaaagaccaggttatacgatgtctgaaaaaactgtaggagacacatttgacaatatattt
agaaaagctgaacagaggataatcgtagctacatttgcatcaaacattcatcgcgttcaa
cagataattgattctgcttacaagtatggaagaaaagtttcgatttcaggacgaagcatg
ataaatgtcataaatgttgccaatgaattagggtatttaagcataccagaaggtacactt
atagacatcgatgaagccaataaacttccgtatggtgaagtggtcattattaccaccgga
agccaaggagagcccatgtcagcgttgacaaggatggcatcttcagaacacaaaaaggtt
gagatagtgccaggtgatacagttgtaatatctgcttctgccatacctggtaacgaaaaa
ttaatatcaagggtgataaatcaactgttcaaaaaaggcgcagaagtaatatacgatgca
ttggctgatgtacatgtatctggacacgcatgccaagaagaaatcaagttgctccacaca
ctaataagaccacaattttttattcccgtacatggagaatataggcatttgaagcaacat
gcaaagttagccgaagatcttggcatggatcctaaaaatatatttattgctgataatggt
acagtgattgaatttacaaaaaattcaggtcggattgctggcacggtaactgcaggtaaa
gtattggttgatggcttaggcgttggtgacgtaggaaatatagtcttaagagataggaaa
catctttctcaagatggtttattggtggtagttgttaccatatctaaagaaaaaggttct
gtaatagctggacctgatataatatcgagaggttttgtatatgtgagagagtcagaggat
ttgatggaggaagccaaaaatcttgttaaagaaactctttcacagtgcgaaaaggatgat
ataacggaatggtcgtctataaagactatgattaaagaatgtttaagcagctttttatat
gaaaaaacaaagagaaatccaatgatattgcctataataatggaaatatag
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