KEGG   Thermoanaerobacterium xylanolyticum: Thexy_2202
Entry
Thexy_2202        CDS       T01505                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
txy  Thermoanaerobacterium xylanolyticum
Pathway
txy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:txy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Thexy_2202
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:txy03021]
    Thexy_2202
   03019 Messenger RNA biogenesis [BR:txy03019]
    Thexy_2202
Transcription machinery [BR:txy03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Thexy_2202
Messenger RNA biogenesis [BR:txy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Thexy_2202
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA NACHT Spore_III_AA AAA_25
Other DBs
NCBI-ProteinID: AEF18209
UniProt: F6BL76
LinkDB
Position
complement(2296580..2298421)
AA seq 613 aa
MDFNDLEGKSLAELRDIAKRYGVKSITKYRKQQLKELIVEKSKQIKLEEKTDEEAKNDIE
NLSLEKNLDEKARLEGQEDEKDSENEKEEKASDTEKIIETVSEDNDAKTEEAESGKEEEK
KTIGKISIPVEELEKSDADYEELRRKLRMRLRSKENITENVEEAKKDIDEAIKVKHEDEA
YEDEESVKEDISLDVTEEKKEEEKSEEKEKEQRKNNSIFIKEGLPLISDVSEPLKELIET
QGDVVAEGVLDIMPDGYGFLRVDNFIQGNKDIYISQSQIRRFGLKVGDKVKGITRIPREG
EKYSAILYVESINGESPDLAKKRIPFDELTPIFPDEKLKLETIPTELAMRLVDIIAPIGK
GQRGMIVAPPKAGKTTLLKKIANSISINHPEVHLIVLLIDERPEEVTDMKRSIKGEVVYS
TFDELPEHHTKVAEMVLEYAKRLVEYGKDVVILMDSITRLARAYNLVTPPSGRTLSGGLD
PSALHPPKRFFGAARNIEEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHLDRKLQ
ERRIFPAIDIYKSGTRKEELLLSQKELEAMWMIRKAMSSIAPNEVTEVLIDRLMRTRTNA
EFIEAIRSQLYKS
NT seq 1842 nt   +upstreamnt  +downstreamnt
ttggattttaatgatttagaagggaaatcccttgcagaacttagggatatagccaaaaga
tatggcgtaaaaagcattacgaagtacaggaaacaacagttaaaagagcttattgtagag
aaatcaaagcagattaaacttgaagaaaagacagacgaagaagcaaaaaatgatatagag
aatttgtctttagaaaaaaatcttgatgagaaagcaagattagaaggacaagaagatgaa
aaggattctgaaaatgaaaaagaagaaaaagcatctgatactgaaaaaatcatagaaact
gtatcagaagacaatgatgcaaagacagaagaagcagaatctggtaaagaggaagagaaa
aagaccatagggaagataagcataccagtggaggagcttgaaaaatcagatgcagattat
gaggagcttagaagaaagctcaggatgcgcttaagaagcaaagaaaatatcacagaaaat
gtggaggaagccaaaaaggatatagatgaggcaataaaggttaagcacgaagatgaagca
tacgaagatgaagaaagtgtcaaggaagatatatctttagatgttacagaggaaaagaaa
gaggaagaaaagtccgaagaaaaagaaaaagagcaaaggaaaaacaacagcatatttata
aaagaagggcttccactgataagtgatgtatctgagccattgaaagagcttatagagact
cagggagacgtggttgcagagggcgttcttgacataatgcctgatggatatggattttta
agagttgataattttatacaaggcaataaagatatttatatatcacaatcgcagattaga
aggtttgggcttaaagttggtgataaagtaaaaggaattacaaggattccgagagaagga
gaaaaatattccgcaattctttatgtggagtctataaatggtgaaagtccggatcttgcc
aagaagaggattcctttcgatgagcttacacctattttcccagatgaaaaattgaaactt
gaaacgattccaacagaacttgctatgaggcttgtggacataatagctcctataggaaaa
ggccaaaggggaatgatcgtggctccaccgaaagctggcaagactacccttttaaagaag
atagccaatagcatttctataaatcatcctgaagttcaccttattgtgcttctcatcgat
gaaaggcctgaagaagttacagacatgaaaaggtctataaaaggcgaagttgtatactcc
acttttgatgaacttccagagcaccatacaaaagtggcagagatggtgttggaatacgcg
aaaagactggtggaatatggcaaagatgttgtcattctcatggacagcataacaaggctt
gcaagagcatacaatcttgtgacgcctccatctggaagaactctatctggtggtcttgat
ccgtcggcacttcacccacctaagagattttttggtgctgccagaaatattgaagaaggt
ggaagcttgacaatcttagctacagctttaatcgagacgggaagtcgcatggatgatgtc
atatttgaggagtttaaaggaacaggcaacatggagcttcatcttgacagaaagctgcaa
gaaaggcgtatatttcctgcaattgatatatacaaatcaggtacaaggaaagaagaattg
ttgctttcgcaaaaagagctggaagcaatgtggatgataagaaaggccatgagcagcatt
gcgcctaatgaagtcactgaggtgttgatagataggcttatgaggacaaggactaatgca
gagtttatagaggccataagatcccaactttataaatcttga

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