Thermoanaerobacterium xylanolyticum: Thexy_2202
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Entry
Thexy_2202 CDS
T01505
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
txy
Thermoanaerobacterium xylanolyticum
Pathway
txy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thexy_2202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
txy03021
]
Thexy_2202
03019 Messenger RNA biogenesis [BR:
txy03019
]
Thexy_2202
Transcription machinery [BR:
txy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Thexy_2202
Messenger RNA biogenesis [BR:
txy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Thexy_2202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA
NACHT
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEF18209
UniProt:
F6BL76
LinkDB
All DBs
Position
complement(2296580..2298421)
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AA seq
613 aa
AA seq
DB search
MDFNDLEGKSLAELRDIAKRYGVKSITKYRKQQLKELIVEKSKQIKLEEKTDEEAKNDIE
NLSLEKNLDEKARLEGQEDEKDSENEKEEKASDTEKIIETVSEDNDAKTEEAESGKEEEK
KTIGKISIPVEELEKSDADYEELRRKLRMRLRSKENITENVEEAKKDIDEAIKVKHEDEA
YEDEESVKEDISLDVTEEKKEEEKSEEKEKEQRKNNSIFIKEGLPLISDVSEPLKELIET
QGDVVAEGVLDIMPDGYGFLRVDNFIQGNKDIYISQSQIRRFGLKVGDKVKGITRIPREG
EKYSAILYVESINGESPDLAKKRIPFDELTPIFPDEKLKLETIPTELAMRLVDIIAPIGK
GQRGMIVAPPKAGKTTLLKKIANSISINHPEVHLIVLLIDERPEEVTDMKRSIKGEVVYS
TFDELPEHHTKVAEMVLEYAKRLVEYGKDVVILMDSITRLARAYNLVTPPSGRTLSGGLD
PSALHPPKRFFGAARNIEEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHLDRKLQ
ERRIFPAIDIYKSGTRKEELLLSQKELEAMWMIRKAMSSIAPNEVTEVLIDRLMRTRTNA
EFIEAIRSQLYKS
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
ttggattttaatgatttagaagggaaatcccttgcagaacttagggatatagccaaaaga
tatggcgtaaaaagcattacgaagtacaggaaacaacagttaaaagagcttattgtagag
aaatcaaagcagattaaacttgaagaaaagacagacgaagaagcaaaaaatgatatagag
aatttgtctttagaaaaaaatcttgatgagaaagcaagattagaaggacaagaagatgaa
aaggattctgaaaatgaaaaagaagaaaaagcatctgatactgaaaaaatcatagaaact
gtatcagaagacaatgatgcaaagacagaagaagcagaatctggtaaagaggaagagaaa
aagaccatagggaagataagcataccagtggaggagcttgaaaaatcagatgcagattat
gaggagcttagaagaaagctcaggatgcgcttaagaagcaaagaaaatatcacagaaaat
gtggaggaagccaaaaaggatatagatgaggcaataaaggttaagcacgaagatgaagca
tacgaagatgaagaaagtgtcaaggaagatatatctttagatgttacagaggaaaagaaa
gaggaagaaaagtccgaagaaaaagaaaaagagcaaaggaaaaacaacagcatatttata
aaagaagggcttccactgataagtgatgtatctgagccattgaaagagcttatagagact
cagggagacgtggttgcagagggcgttcttgacataatgcctgatggatatggattttta
agagttgataattttatacaaggcaataaagatatttatatatcacaatcgcagattaga
aggtttgggcttaaagttggtgataaagtaaaaggaattacaaggattccgagagaagga
gaaaaatattccgcaattctttatgtggagtctataaatggtgaaagtccggatcttgcc
aagaagaggattcctttcgatgagcttacacctattttcccagatgaaaaattgaaactt
gaaacgattccaacagaacttgctatgaggcttgtggacataatagctcctataggaaaa
ggccaaaggggaatgatcgtggctccaccgaaagctggcaagactacccttttaaagaag
atagccaatagcatttctataaatcatcctgaagttcaccttattgtgcttctcatcgat
gaaaggcctgaagaagttacagacatgaaaaggtctataaaaggcgaagttgtatactcc
acttttgatgaacttccagagcaccatacaaaagtggcagagatggtgttggaatacgcg
aaaagactggtggaatatggcaaagatgttgtcattctcatggacagcataacaaggctt
gcaagagcatacaatcttgtgacgcctccatctggaagaactctatctggtggtcttgat
ccgtcggcacttcacccacctaagagattttttggtgctgccagaaatattgaagaaggt
ggaagcttgacaatcttagctacagctttaatcgagacgggaagtcgcatggatgatgtc
atatttgaggagtttaaaggaacaggcaacatggagcttcatcttgacagaaagctgcaa
gaaaggcgtatatttcctgcaattgatatatacaaatcaggtacaaggaaagaagaattg
ttgctttcgcaaaaagagctggaagcaatgtggatgataagaaaggccatgagcagcatt
gcgcctaatgaagtcactgaggtgttgatagataggcttatgaggacaaggactaatgca
gagtttatagaggccataagatcccaactttataaatcttga
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