Undibacterium parvum: EJN92_04900
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Entry
EJN92_04900 CDS
T05754
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
upv
Undibacterium parvum
Pathway
upv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EJN92_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upv03400
]
EJN92_04900
Enzymes [BR:
upv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EJN92_04900
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EJN92_04900
DNA repair and recombination proteins [BR:
upv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EJN92_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AZP11398
UniProt:
A0A3S9HH54
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All DBs
Position
complement(1165654..1166475)
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AA seq
273 aa
AA seq
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MPELPEVEVTRRGVTPHLQAKTVSEVVLRRSGLRWPFPSNLPDLLKGETILSTGRRGKYL
LLNFAHGTLLIHLGMSGHLRILPALTPAAKHDHIDIVVGAELLRMHDPRRFGAVLWHAAI
DGDVATHPLLRGLGVEPLEAQFNAQLLYRQSRQRHAAIKQVLLAGDIVVGVGNIYASESL
FKARINPKVAADRISLARYTLLVAAIQDTLAAAIEKGGSTLRDFVGVDGKSGYFQQSYFV
YDRCGEPCRICGTTIRQIKQGQRSSFYCVNCQK
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagttgaagtgacgcgacgtggtgtgacgccgcacttacaagcc
aaaaccgtgagcgaggtggtgctgcgtcgcagcggtttacgttggccgtttccgtcaaat
ctgcctgacttattgaaaggcgagaccatcttaagtaccggtcggcgcggcaaatatctg
ttgctcaattttgcgcatggcacgctcttgattcatttagggatgtctggccatctgcgg
attttgccggccctaacccctgctgccaaacacgatcatatcgatatcgtcgttggtgcc
gagctcttgcgcatgcatgatccgcgccgtttcggcgcagtgttgtggcatgcggcgatt
gatggtgatgtagcaacacatccactattgcgtggcttaggggtggaaccactggaggct
caattcaatgcacaactgttgtatcggcaatctcgccagcgtcatgccgcgatcaagcaa
gtcttgttagccggcgatattgtggtgggagtagggaatatttatgcctcagagagtctg
tttaaagccaggataaatccgaaagtcgccgccgatcgtatcagcttagcgcgctatacc
ttgctggtggcggcgatccaagatactttagccgccgcgatagagaagggtggcagtact
ctgcgcgactttgtcggagtggacgggaaatcgggttatttccaacagtcgtatttcgtt
tatgatcgctgtggcgagccttgtcgtatttgcggcaccacgatcaggcagattaaacag
ggacaacgtagcagtttttactgtgtaaattgccaaaaataa
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