Uncinocarpus reesii: UREG_03913
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Entry
UREG_03913 CDS
T01132
Name
(RefSeq) hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ure
Uncinocarpus reesii
Pathway
ure03008
Ribosome biogenesis in eukaryotes
ure03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ure00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
UREG_03913
09123 Folding, sorting and degradation
03018 RNA degradation
UREG_03913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ure03019
]
UREG_03913
03009 Ribosome biogenesis [BR:
ure03009
]
UREG_03913
03016 Transfer RNA biogenesis [BR:
ure03016
]
UREG_03913
03036 Chromosome and associated proteins [BR:
ure03036
]
UREG_03913
Messenger RNA biogenesis [BR:
ure03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
UREG_03913
mRNA degradation factors
5'-3' decay
5' exonucleases
UREG_03913
Ribosome biogenesis [BR:
ure03009
]
Eukaryotic type
Pre-60S particles
RNases
UREG_03913
Transfer RNA biogenesis [BR:
ure03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
UREG_03913
Chromosome and associated proteins [BR:
ure03036
]
Eukaryotic type
Gene silencing
piRNA pathway
UREG_03913
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN1_D2_D3
XRN1_D1
XRN_M
SH3_12
Motif
Other DBs
NCBI-GeneID:
8444694
NCBI-ProteinID:
XP_002544396
UniProt:
C4JM55
LinkDB
All DBs
AA seq
1372 aa
AA seq
DB search
MGVPKFFRWLSERYPAISQLIAENRIPEFDCLYLDMNGIIHNCTHKDSDSPTFRMTEDKM
FIAIFNYIEHLFGKIKPKKLFFMAIDGVAPRAKMNQQRARRFRTALDAEMAKEKAIREGV
EMPKEDAFDSNCITPGTEFMAKLTKQLKYFINKKVSEDAEWQGVEVILSGHEVPGEGEHK
IMEYIRQSKAQPGYDPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQSQKKVKE
LEHQNFYLLHLCIVREYLELEFQELEVEGALKFDFDMERIIDDFILMAFFVGNDFLPNLP
NLHINEGALAWMFKVYKEVLPKLDGYINERGRINLDRLGVLLDSLGDVEFRFFEAEYSDA
RWIKSKQNVGEEVQDISRDPKTLTISPAQKHILSKVKKYISHCPVNDDGQSIPLDLSPSL
PARDRKFVEQLADDLRIPWASVANDHGDRFLRLQLPSNQRTANDDDSGDEDEEAQIAVLR
VLKKYDNATVKETTAEDAQQAAEKKYEQKFQEWKNKYYQEKFEWGTDNEEEMRNKKIVPE
AYHSLMTSPDSPIIDFYPRDFELDMNGKKMEWEAVVKIPFINETRLLNAMATKEHLLTPE
EKSRNSFGVTLKFTHSPDIEFTYPSSLVGIFPDIPKCHCIENVYELPTMEGLEPYVGLVD
GAKVGVEALAGFPSLKTLPHSGQLGFHGVTVFQQESRNETMVVTLMESEIRARTEIAKAK
IGKRVHVGYPFLHEALVVCVSDELFDYVQVDGEQHIVPIPHGPGQIEHWKRKADRIESYY
SKRLGMIIGEVESIVHVHVLKGLVKTELGATVKEFAEIPGIETDYASQLIVDEVISQDDR
FIEREAIPIEEEFPEGTKAFFLGEFNYGSPLHITGHEDGKMFGLVSTIKGSKGTRFRPRA
VARSLRLNPLTVAKITSSFSVMSEGKRVNLGLNLKFEAKKLKVLGYSRRGQSGWEFSEKA
ISLLQEYMIKFPDFIAGIQRKPQGDLFEPTDFYPPEIAAAKIKEIQTWLKSVEAKNFERV
PLEAEQLDSDVVGAIEAAADEWFRHKRTGIPQKIKGVPRNAVLKPADAEHRLGNQIFGLG
DRVIYAQDSGKVPIATKGTIVGLTRTARTVLLDVIFDVSFMSGTTLAGRCSPFRGQTVAA
SSVLNLTYKQLIAMTRASNEQVRAQQQAPAQQGYGAPLGPGGAGQLRDAPTPPPLRGSYR
SAVNGQDNSRGMARGRGSPRVLPFRHQPHHDHAPPQASETSPGRNWRGNGHHHHQQHHHH
QQQGNDSTRQNTDSETAARPAASRGRGRGRGGIGSTQLPHSRGGYVSVEKVDPGAGVIMN
NPNFRPRSHNAVPPPANLNQRGAYRGRGFANRGSPRGRGRGRGTATAESQKT
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttccaaagttcttcagatggctctcagagcgttatccagcaatttcgcagctc
attgcagagaatcgcattcccgagtttgactgcctctacctcgacatgaatgggatcatc
cacaactgcacacacaaagactcagactcgcccacttttcgcatgacggaagataaaatg
tttatcgctatattcaactatattgaacatcttttcggcaaaatcaagccaaagaaactt
ttcttcatggcgatcgacggtgtcgcccctcgagcgaaaatgaaccaacaacgagctcgc
cgctttcggacggcgttagatgcagaaatggcgaaagaaaaggcaattcgagagggagtc
gagatgcccaaagaggatgcttttgatagcaactgcatcactccgggaacggagtttatg
gcgaagctcacgaaacaattgaaatatttcatcaacaagaaggtatcagaagatgcagaa
tggcagggagtggaggtcattctctcgggtcatgaggtcccgggtgagggagaacacaag
attatggaatatatccgacagtcgaaagcccagccgggctatgatccgaacgtccgccat
tgcttatacggtttagatgctgatctaatcatgttaggtttattaagccacgacccccat
ttctgtctacttcgtgaagaagtcacatttggcaggcaaagtcaaaagaaagtgaaggag
ttagagcatcaaaatttctaccttttgcatttatgcattgttagggagtatttggaactt
gaatttcaggaattggaagtagagggagctctgaaattcgatttcgacatggagcggata
attgacgatttcattctgatggctttctttgttggcaatgatttcttacccaatcttccg
aacttgcatataaacgaaggcgcattggcgtggatgtttaaggtatacaaagaagtttta
ccaaaactggatggatacatcaatgaacgcgggcggatcaatttggatcgcttgggtgtt
cttctcgactcgctgggcgatgtcgagttccggttcttcgaggccgagtattccgatgct
cgatggattaaatccaaacaaaacgttggagaagaggtccaggatatctcacgcgaccct
aaaaccctaaccatctccccagcccagaaacatattctcagcaaagtcaaaaaatacatc
tctcattgtccggttaatgacgatggccagtccattccgctggacctctcgccgtctctt
ccggcaagggataggaagttcgttgagcaactcgcggacgacctacgtattccttgggcc
tcggtagccaacgaccatggcgatcgcttcttgagactccagctgccttcgaaccagagg
acggcaaacgatgatgattcaggcgatgaagacgaagaggcccagatcgccgtgctgcgc
gttctcaagaaatatgacaacgcgacggtcaaggagactactgcggaagatgctcaacaa
gccgcagagaagaaatacgagcaaaagttccaagagtggaaaaataagtattatcaggag
aagttcgagtggggcacagacaacgaggaagagatgcgaaataagaagatagtaccagag
gcctatcactcattgatgacgtctcccgactctcctattatcgatttctaccctcgagat
tttgaattggacatgaatgggaaaaagatggagtgggaagctgttgttaagatcccattt
atcaacgaaacccgccttttgaatgcgatggccacaaaggagcacttgctcacgccagag
gaaaaatcaagaaacagtttcggcgttacgctgaagtttactcactcgcctgatattgaa
tttacctatcctagctcgctagtgggcatatttccggatatccccaagtgccattgcata
gaaaatgtctacgagttgccaacaatggagggactagagccctatgttggactggtagat
ggcgctaaagtgggtgttgaggcgctggccggattccccagcctgaaaacgttgccacat
tcaggtcaattgggcttccatggcgttacagtgttccagcaggaaagccgcaatgaaact
atggtcgttactcttatggaatcagaaattcgcgcgcgtactgagattgccaaggcgaaa
atagggaaaagggtgcatgtcgggtaccctttccttcacgaagcactggtcgtgtgcgtc
tcggacgagcttttcgactatgttcaggtggacggtgagcaacatattgttccaattccg
catggccctgggcaaatagagcattggaaaagaaaagcggacaggattgaatcatattac
agcaagaggttgggcatgataattggcgaagtagagtcgatcgtgcacgtccacgtccta
aaaggccttgtcaaaacggagcttggagctactgtaaaagaattcgcagaaattcccggt
atcgaaacggattacgcctcgcaattgatcgtggacgaagttatcagccaggacgatcgc
ttcattgaacgggaggcaattcctattgaggaggaatttccagagggcaccaaggctttc
tttttaggcgaattcaactatggctctccgctacatattacgggccatgaagacggcaaa
atgttcggccttgtttctaccatcaaaggctcaaaaggaacccgatttcggccgcgagca
gttgcccgaagtttacggctaaacccactgacggttgccaaaattacatcctcgttctcc
gtcatgtcggaaggcaagcgcgttaatttgggattaaatctcaaattcgaagcgaaaaag
ctgaaagtgttgggctactcccgccgcgggcaaagcgggtgggaattcagtgagaaagca
ataagccttctacaggaatacatgatcaaattcccggatttcattgcaggaattcagcga
aagccccaaggagacctttttgagcctacagatttctacccacctgaaatcgcggcggct
aaaattaaagaaatccaaacttggctgaagtccgtggaagcgaaaaatttcgaacgggtc
cccttggaagctgaacaacttgactcggatgtcgtgggcgcgattgaagctgccgcagat
gaatggtttcgtcataagcgcaccggcattccccagaagataaaaggcgttccacggaat
gctgtcctgaaacctgcagatgctgaacatcggttgggaaatcaaatattcggccttggt
gatagagttatttatgcacaggattccggcaaagttccaattgctactaaaggtaccata
gttggtttgacgcgtacagctagaacagtgctgctagatgtgatcttcgacgtttctttc
atgagtggcactacacttgccggccgttgctcgccattccgcggccaaacagttgccgca
tcctcggtgttgaatctcacatacaaacaacttattgccatgactcgagcgtccaatgag
caggtcagggcacagcaacaagctccagctcaacaaggctacggtgctcctcttggtcct
ggtggagcaggacagttgagggacgctcccacgccgccaccattaagagggtcatatcga
tctgccgtcaacgggcaagacaactcaagaggaatggcccgtgggcgcggtagtccccgt
gttttgccattccgtcatcaaccgcatcatgatcacgcaccaccccaggcgtcagaaacc
tccccgggacggaactggcggggcaacggccaccaccaccaccagcagcaccatcaccac
caacagcagggcaatgatagcactcgtcagaatacggacagtgaaacggccgcacgccca
gcggcgtctcgcggtcgtggtcgcggaagaggaggaatcggatcaacccagcttcctcat
tcgcgtggtgggtatgtatctgtggagaaggtcgaccctggtgcaggcgttataatgaat
aacccgaatttcaggccaagatctcacaatgctgttccaccccctgcaaacttgaaccaa
cggggtgcataccgcggtagagggtttgctaatcgtggatccccacgcgggagaggtcgt
gggagaggaacagcgactgctgagagccaaaagacctga
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