KEGG   Uncinocarpus reesii: UREG_03913
Entry
UREG_03913        CDS       T01132                                 
Name
(RefSeq) hypothetical protein
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ure  Uncinocarpus reesii
Pathway
ure03008  Ribosome biogenesis in eukaryotes
ure03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ure00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    UREG_03913
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UREG_03913
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ure03019]
    UREG_03913
   03009 Ribosome biogenesis [BR:ure03009]
    UREG_03913
   03016 Transfer RNA biogenesis [BR:ure03016]
    UREG_03913
   03036 Chromosome and associated proteins [BR:ure03036]
    UREG_03913
Messenger RNA biogenesis [BR:ure03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     UREG_03913
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     UREG_03913
Ribosome biogenesis [BR:ure03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    UREG_03913
Transfer RNA biogenesis [BR:ure03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    UREG_03913
Chromosome and associated proteins [BR:ure03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    UREG_03913
SSDB
Motif
Pfam: XRN_N XRN1_D2_D3 XRN1_D1 XRN_M SH3_12
Other DBs
NCBI-GeneID: 8444694
NCBI-ProteinID: XP_002544396
UniProt: C4JM55
LinkDB
AA seq 1372 aa
MGVPKFFRWLSERYPAISQLIAENRIPEFDCLYLDMNGIIHNCTHKDSDSPTFRMTEDKM
FIAIFNYIEHLFGKIKPKKLFFMAIDGVAPRAKMNQQRARRFRTALDAEMAKEKAIREGV
EMPKEDAFDSNCITPGTEFMAKLTKQLKYFINKKVSEDAEWQGVEVILSGHEVPGEGEHK
IMEYIRQSKAQPGYDPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQSQKKVKE
LEHQNFYLLHLCIVREYLELEFQELEVEGALKFDFDMERIIDDFILMAFFVGNDFLPNLP
NLHINEGALAWMFKVYKEVLPKLDGYINERGRINLDRLGVLLDSLGDVEFRFFEAEYSDA
RWIKSKQNVGEEVQDISRDPKTLTISPAQKHILSKVKKYISHCPVNDDGQSIPLDLSPSL
PARDRKFVEQLADDLRIPWASVANDHGDRFLRLQLPSNQRTANDDDSGDEDEEAQIAVLR
VLKKYDNATVKETTAEDAQQAAEKKYEQKFQEWKNKYYQEKFEWGTDNEEEMRNKKIVPE
AYHSLMTSPDSPIIDFYPRDFELDMNGKKMEWEAVVKIPFINETRLLNAMATKEHLLTPE
EKSRNSFGVTLKFTHSPDIEFTYPSSLVGIFPDIPKCHCIENVYELPTMEGLEPYVGLVD
GAKVGVEALAGFPSLKTLPHSGQLGFHGVTVFQQESRNETMVVTLMESEIRARTEIAKAK
IGKRVHVGYPFLHEALVVCVSDELFDYVQVDGEQHIVPIPHGPGQIEHWKRKADRIESYY
SKRLGMIIGEVESIVHVHVLKGLVKTELGATVKEFAEIPGIETDYASQLIVDEVISQDDR
FIEREAIPIEEEFPEGTKAFFLGEFNYGSPLHITGHEDGKMFGLVSTIKGSKGTRFRPRA
VARSLRLNPLTVAKITSSFSVMSEGKRVNLGLNLKFEAKKLKVLGYSRRGQSGWEFSEKA
ISLLQEYMIKFPDFIAGIQRKPQGDLFEPTDFYPPEIAAAKIKEIQTWLKSVEAKNFERV
PLEAEQLDSDVVGAIEAAADEWFRHKRTGIPQKIKGVPRNAVLKPADAEHRLGNQIFGLG
DRVIYAQDSGKVPIATKGTIVGLTRTARTVLLDVIFDVSFMSGTTLAGRCSPFRGQTVAA
SSVLNLTYKQLIAMTRASNEQVRAQQQAPAQQGYGAPLGPGGAGQLRDAPTPPPLRGSYR
SAVNGQDNSRGMARGRGSPRVLPFRHQPHHDHAPPQASETSPGRNWRGNGHHHHQQHHHH
QQQGNDSTRQNTDSETAARPAASRGRGRGRGGIGSTQLPHSRGGYVSVEKVDPGAGVIMN
NPNFRPRSHNAVPPPANLNQRGAYRGRGFANRGSPRGRGRGRGTATAESQKT
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgggcgttccaaagttcttcagatggctctcagagcgttatccagcaatttcgcagctc
attgcagagaatcgcattcccgagtttgactgcctctacctcgacatgaatgggatcatc
cacaactgcacacacaaagactcagactcgcccacttttcgcatgacggaagataaaatg
tttatcgctatattcaactatattgaacatcttttcggcaaaatcaagccaaagaaactt
ttcttcatggcgatcgacggtgtcgcccctcgagcgaaaatgaaccaacaacgagctcgc
cgctttcggacggcgttagatgcagaaatggcgaaagaaaaggcaattcgagagggagtc
gagatgcccaaagaggatgcttttgatagcaactgcatcactccgggaacggagtttatg
gcgaagctcacgaaacaattgaaatatttcatcaacaagaaggtatcagaagatgcagaa
tggcagggagtggaggtcattctctcgggtcatgaggtcccgggtgagggagaacacaag
attatggaatatatccgacagtcgaaagcccagccgggctatgatccgaacgtccgccat
tgcttatacggtttagatgctgatctaatcatgttaggtttattaagccacgacccccat
ttctgtctacttcgtgaagaagtcacatttggcaggcaaagtcaaaagaaagtgaaggag
ttagagcatcaaaatttctaccttttgcatttatgcattgttagggagtatttggaactt
gaatttcaggaattggaagtagagggagctctgaaattcgatttcgacatggagcggata
attgacgatttcattctgatggctttctttgttggcaatgatttcttacccaatcttccg
aacttgcatataaacgaaggcgcattggcgtggatgtttaaggtatacaaagaagtttta
ccaaaactggatggatacatcaatgaacgcgggcggatcaatttggatcgcttgggtgtt
cttctcgactcgctgggcgatgtcgagttccggttcttcgaggccgagtattccgatgct
cgatggattaaatccaaacaaaacgttggagaagaggtccaggatatctcacgcgaccct
aaaaccctaaccatctccccagcccagaaacatattctcagcaaagtcaaaaaatacatc
tctcattgtccggttaatgacgatggccagtccattccgctggacctctcgccgtctctt
ccggcaagggataggaagttcgttgagcaactcgcggacgacctacgtattccttgggcc
tcggtagccaacgaccatggcgatcgcttcttgagactccagctgccttcgaaccagagg
acggcaaacgatgatgattcaggcgatgaagacgaagaggcccagatcgccgtgctgcgc
gttctcaagaaatatgacaacgcgacggtcaaggagactactgcggaagatgctcaacaa
gccgcagagaagaaatacgagcaaaagttccaagagtggaaaaataagtattatcaggag
aagttcgagtggggcacagacaacgaggaagagatgcgaaataagaagatagtaccagag
gcctatcactcattgatgacgtctcccgactctcctattatcgatttctaccctcgagat
tttgaattggacatgaatgggaaaaagatggagtgggaagctgttgttaagatcccattt
atcaacgaaacccgccttttgaatgcgatggccacaaaggagcacttgctcacgccagag
gaaaaatcaagaaacagtttcggcgttacgctgaagtttactcactcgcctgatattgaa
tttacctatcctagctcgctagtgggcatatttccggatatccccaagtgccattgcata
gaaaatgtctacgagttgccaacaatggagggactagagccctatgttggactggtagat
ggcgctaaagtgggtgttgaggcgctggccggattccccagcctgaaaacgttgccacat
tcaggtcaattgggcttccatggcgttacagtgttccagcaggaaagccgcaatgaaact
atggtcgttactcttatggaatcagaaattcgcgcgcgtactgagattgccaaggcgaaa
atagggaaaagggtgcatgtcgggtaccctttccttcacgaagcactggtcgtgtgcgtc
tcggacgagcttttcgactatgttcaggtggacggtgagcaacatattgttccaattccg
catggccctgggcaaatagagcattggaaaagaaaagcggacaggattgaatcatattac
agcaagaggttgggcatgataattggcgaagtagagtcgatcgtgcacgtccacgtccta
aaaggccttgtcaaaacggagcttggagctactgtaaaagaattcgcagaaattcccggt
atcgaaacggattacgcctcgcaattgatcgtggacgaagttatcagccaggacgatcgc
ttcattgaacgggaggcaattcctattgaggaggaatttccagagggcaccaaggctttc
tttttaggcgaattcaactatggctctccgctacatattacgggccatgaagacggcaaa
atgttcggccttgtttctaccatcaaaggctcaaaaggaacccgatttcggccgcgagca
gttgcccgaagtttacggctaaacccactgacggttgccaaaattacatcctcgttctcc
gtcatgtcggaaggcaagcgcgttaatttgggattaaatctcaaattcgaagcgaaaaag
ctgaaagtgttgggctactcccgccgcgggcaaagcgggtgggaattcagtgagaaagca
ataagccttctacaggaatacatgatcaaattcccggatttcattgcaggaattcagcga
aagccccaaggagacctttttgagcctacagatttctacccacctgaaatcgcggcggct
aaaattaaagaaatccaaacttggctgaagtccgtggaagcgaaaaatttcgaacgggtc
cccttggaagctgaacaacttgactcggatgtcgtgggcgcgattgaagctgccgcagat
gaatggtttcgtcataagcgcaccggcattccccagaagataaaaggcgttccacggaat
gctgtcctgaaacctgcagatgctgaacatcggttgggaaatcaaatattcggccttggt
gatagagttatttatgcacaggattccggcaaagttccaattgctactaaaggtaccata
gttggtttgacgcgtacagctagaacagtgctgctagatgtgatcttcgacgtttctttc
atgagtggcactacacttgccggccgttgctcgccattccgcggccaaacagttgccgca
tcctcggtgttgaatctcacatacaaacaacttattgccatgactcgagcgtccaatgag
caggtcagggcacagcaacaagctccagctcaacaaggctacggtgctcctcttggtcct
ggtggagcaggacagttgagggacgctcccacgccgccaccattaagagggtcatatcga
tctgccgtcaacgggcaagacaactcaagaggaatggcccgtgggcgcggtagtccccgt
gttttgccattccgtcatcaaccgcatcatgatcacgcaccaccccaggcgtcagaaacc
tccccgggacggaactggcggggcaacggccaccaccaccaccagcagcaccatcaccac
caacagcagggcaatgatagcactcgtcagaatacggacagtgaaacggccgcacgccca
gcggcgtctcgcggtcgtggtcgcggaagaggaggaatcggatcaacccagcttcctcat
tcgcgtggtgggtatgtatctgtggagaaggtcgaccctggtgcaggcgttataatgaat
aacccgaatttcaggccaagatctcacaatgctgttccaccccctgcaaacttgaaccaa
cggggtgcataccgcggtagagggtttgctaatcgtggatccccacgcgggagaggtcgt
gggagaggaacagcgactgctgagagccaaaagacctga

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