Variovorax sp. PAMC 28711: AX767_09975
Help
Entry
AX767_09975 CDS
T04325
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AX767_09975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaa03019
]
AX767_09975
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_09975
Enzymes [BR:
vaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AX767_09975
Messenger RNA biogenesis [BR:
vaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AX767_09975
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AX767_09975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AMM26713
UniProt:
A0A126ZHX0
LinkDB
All DBs
Position
2012285..2014156
Genome browser
AA seq
623 aa
AA seq
DB search
MDGDAAPAAILHEVFGYAQFRGAQAEIVDHVVAGGDALVLMPTGGGKSLCYQIPAIARQR
MGRGVSIVVSPLIALMHDQVGALHEAGVNAAFLNSTLDWEQTQDVERRMLSGEITLLYAA
PERVNTPRFLQQLDSLKQRGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYPGVPRI
ALTATADDLTRADIVERLQLEEARQFVSSFDRPNIRYTIVEKKEATTQLLRFIESEHEGD
AGVVYCQSRKRVEDVAITLQNAGINALPYHAGLDAAVRQKHQDRFLREEGIVMVATIAFG
MGIDKPDVRFVGHLDMPKNIEGYYQETGRAGRDGAPADAWMTYGLQDVVNQRRMIDESPA
GEPFKEVMRGKLDALLSLAEASDCRRVRLLGYFGEASTPCGNCDNCITPPQVWDGTDAAR
KLLSTIYRVQQQSGISFGAGHVMDILRGKVTDKTKQFGHERISTFGLGAEFSEVQLRGVL
RQLIATGALAVDTEAFNTLKLTEGSRAVLKGEANVALRESVSSPASRSGGKTRRDKTARG
APSPAAATLDAAGQARFDALKAWRAEVAKEHNLPAYVIFHDATLASIAERSPATLEDLQG
ISGIGTKKLEAYGADVLRVCSSF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atcgacggcgacgccgcgcccgccgcgatccttcacgaggtttttggctacgcgcagttc
cgtggcgcgcaggccgagatcgtcgaccacgtggtcgcgggcggcgacgcgctggtgctg
atgcccacgggcggtggcaagtcgctgtgctaccagattccggccatcgcgcggcagcgc
atggggcgcggcgtgagcatcgtggtgtcgccgctgatcgcgctgatgcacgaccaggtc
ggtgcgctgcacgaggccggcgtgaacgcggctttcctcaattcgacgctcgactgggag
cagacgcaggacgtcgagcgacgcatgctgagcggcgagatcacgctgctctacgcggcg
cccgagcgggtgaacacgccgcgcttcctgcagcagctcgactcgctgaagcagcgcggc
aagctgtcgcttttcgcgatcgacgaggcgcattgcgtgagccagtggggccacgatttt
cgccccgagtaccgcgcgctcaccgtgctgcacgagcggtacccgggcgtgccgcgcatc
gcgctcaccgccaccgccgacgacctgacgcgggccgacatcgtcgagcgcctgcagctc
gaagaagcgcgccagttcgtcagcagcttcgaccgcccgaacatccgctacacgatcgtc
gagaagaaggaggcgaccacgcagttgctgcgcttcatcgagagcgagcacgaaggcgat
gccggcgtcgtctattgccagtcgcgcaagcgggttgaggacgtggcgatcaccctgcag
aacgcaggcatcaacgcgctgccgtaccacgcgggcctcgacgcggccgtgcggcaaaaa
caccaggatcggttcctgcgcgaagaaggcatcgtgatggtcgcgaccatcgcgttcggc
atgggcatcgacaagcccgatgtgcgcttcgtcggccacctcgacatgcccaagaacatc
gagggctactaccaggaaaccggtcgcgcgggccgcgacggcgcgccggccgatgcctgg
atgacctacggcctgcaggacgtggtgaaccagcgccgcatgatcgacgagagccccgcc
ggcgagccattcaaggaggtcatgcgcggcaagctcgatgcgctgctgtcgctggccgaa
gcgagcgactgccgccgcgtgcggctgctcggttacttcggcgaagcctcgacgccgtgc
ggcaattgcgacaactgcatcacgccgccgcaggtgtgggacggcacggacgccgcgcgc
aagctgctcagcacgatctatcgcgtgcagcagcagagcggcatcagcttcggtgcgggc
cacgtcatggacatcctgcgcggcaaggtgaccgacaagaccaaacagttcggccacgag
cgcattagcaccttcgggctgggcgcggagttcagcgaagtgcaactgcgcggcgtgctg
cggcagttgatcgcgaccggtgcactggcggtcgacaccgaagccttcaacacgctcaag
ctcaccgagggctcgcgcgcggtgttgaagggcgaagcgaacgtcgcgctgcgcgaatcg
gtgtcgtcgccagcatcacgctcggggggcaagacgcgccgcgacaagaccgcacgcggc
gcgccctcgccggccgccgcgacgctcgacgccgcaggccaggcgcgcttcgacgcgctc
aaggcatggcgcgccgaagtcgcgaaggagcacaacctgccggcctacgtgatctttcac
gacgccacgctcgcgtcgatcgccgagcgctcgcccgccacgctggaagacctgcaaggc
atcagcggcatcggcaccaagaagctggaagcgtacggggcggacgtgctgcgggtgtgc
agcagcttttga
DBGET
integrated database retrieval system
