Variovorax sp. PAMC 28711: AX767_11770
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Entry
AX767_11770 CDS
T04325
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03420
Nucleotide excision repair
vaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AX767_11770
03430 Mismatch repair
AX767_11770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_11770
Enzymes [BR:
vaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AX767_11770
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AX767_11770
MMR (mismatch excision repair)
Other MMR factors
AX767_11770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
AAA_12
NACHT
Motif
Other DBs
NCBI-ProteinID:
AMM24963
UniProt:
A0A126ZCZ5
LinkDB
All DBs
Position
2399164..2401242
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AA seq
692 aa
AA seq
DB search
MSAVAMLPTTQAERLAAVLSTLNDEQRAAVEHELQPLLVIAGAGSGKTSTLAHRVARLIA
GGVDPQRILLLTFSRRAAQEMARRAGQVVARVFALKSEAPPALPWAGTFHGIGARLLREY
AAQIGLKENFTIHDRGDAEDLLGLVRHDLGLSSSARRFPHKGTCLSIYSRAVNTCEPLDA
VLKHAFPWCAEWEAELKRLFGAYVEAKQQQNVLDYDDLLLYWAGMVAEPALAAAVGARFD
HVLVDEYQDTNRLQAAILTAMKPDGRGVTVVGDDAQSIYSFRGATVRNILDFPAQFSQAA
RVVTLERNYRSTQPILDASNAVIAQAAERHAKTLWTDKPSAGRPQIILVPDEAQQATWVA
DRVLAHREGGLALKSQAVLFRTSTHSAALELELARRNIPFVKFGGLKFLEAAHVKDLLAV
LRFAENPRGRMAGFRVTQLIPGIGPVTSTRLLDAMDVAADPGAAVQDFVPPATAQVEWQR
FAETYAALRSAVLPWPADVELALRWYIPHLERLYDDTSDVRRGDVEQLARLASGYASRER
FLTELTLDPPEATSDRPGPPLLDEDYLILSTIHSAKGQEWNSVHVLNVVDGCLPADVAQG
ASELEEERRLLYVAMTRARDHLHLLVPQRFYVTQQSARGDRHLYAGRTRFISEADTAHFE
QQTWPPPPPRAPAVPPPAATIDLLARMRASWK
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgtggcgatgcttcctactacccaggccgaaaggctcgcggccgtgctgtcc
acgctcaacgacgaacagcgcgcggcggtcgagcacgaactgcagcctttgctggtgatc
gctggcgccggatcgggcaagaccagcacgctggcgcaccgcgtcgcccggctcattgca
ggcggcgtcgatccgcagcgcatcctcctgctcacgttctctcgccgtgccgcacaggag
atggcgcgccgtgcgggtcaggtggtggcgcgcgtgttcgcgctgaagtccgaagcgccc
ccggcgctgccctgggccggcaccttccatggcatcggcgcgcggctgctgcgcgagtac
gccgcacagatcgggctgaaggaaaacttcacgatccatgaccgcggcgacgcggaagac
ctgctaggcctggtgcggcacgacctcggcctgtcgtccagtgcacgccgctttccgcac
aagggcacctgcctctctatctattcgcgcgccgtcaacacctgcgagccgctcgacgcg
gtgctcaagcacgccttcccgtggtgcgccgaatgggaggccgaactcaagcgcctgttc
ggcgcctacgtcgaggccaagcagcagcagaacgtgctcgactacgacgacctgctcctt
tactgggccggcatggtggccgagcccgcgctggccgcggccgtcggcgcgcgcttcgac
catgtgctggtcgacgagtaccaggacacgaaccgcttgcaggccgccatcctcaccgcg
atgaagcccgacggtcgcggtgtcacggtggtgggcgacgacgcccagtcgatctattcg
ttccgcggtgcgacggtgcgcaacatcctcgactttccggcgcagttctcgcaagcagcg
cgcgtcgtcacgctggagcgcaactaccgttcgacccagccgatcctcgatgcgtcgaac
gcggtgatcgcgcaagctgccgagcggcatgccaagacgctctggaccgacaaaccttcc
gccggtcggccccagatcatcctggtgcccgacgaagcgcagcaggcgacctgggtggcc
gaccgagtgctcgcccaccgcgaaggcgggctggcactcaagtcgcaggccgtgctgttc
cgcacttcgacgcacagcgccgcgctggagctcgaactggcgcgccgcaacatcccgttc
gtcaagttcggcgggctcaagtttctcgaagccgcgcatgtgaaggacctgctcgcggtg
ctgcgcttcgccgagaacccgcgcggccgcatggcgggctttcgtgtcacgcaactgatt
cccggcatcggcccggtgacctcgacgcgcctgctggatgcgatggacgtggcggccgat
ccgggcgctgcggtgcaggacttcgtgccgccggcgacggcgcaggtcgagtggcaacgt
ttcgccgaaacctacgcggcgctgcgcagtgcggtgctgccgtggccggccgatgtggaa
ctggcattgcgctggtacatcccgcatctcgagcggctgtacgacgacacttcggacgtg
cggcgaggcgatgtcgagcaactggcccggctggcgtcgggctacgcctcgcgcgagcgg
tttctgacggagctcacgctcgatccaccggaggcgacgagcgaccgccccggcccgcca
ctgctcgacgaggactacctcatcctgtcgaccatccattcggccaagggacaggaatgg
aattcggtgcacgtgctcaacgtggtcgacggctgcctcccggccgatgtggcgcagggc
gcaagcgagctcgaggaagagcgacgcctgctctacgtcgcgatgacgcgcgcccgagac
catttgcacctgctggtgccgcagcgcttctacgtgacgcagcagtcggcgcgcggcgac
cggcatctttatgcggggcgcacgcgcttcatcagcgaagccgacaccgcgcatttcgag
cagcagacctggccgcctccgccgccgcgcgcgcccgccgttccgccgccggccgcgacg
atcgacctgctggcccggatgcgcgcgagctggaagtga
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