KEGG   Variovorax sp. PAMC 28711: AX767_19475Help
Entry
AX767_19475       CDS       T04325                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vaa  Variovorax sp. PAMC 28711
Pathway
vaa03030  DNA replication
vaa03410  Base excision repair
vaa03420  Nucleotide excision repair
vaa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vaa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AX767_19475
   03410 Base excision repair
    AX767_19475
   03420 Nucleotide excision repair
    AX767_19475
   03430 Mismatch repair
    AX767_19475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vaa03032]
    AX767_19475
   03400 DNA repair and recombination proteins [BR:vaa03400]
    AX767_19475
Enzymes [BR:vaa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AX767_19475
    6.5.1.6  DNA ligase (ATP or NAD+)
     AX767_19475
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AX767_19475
DNA replication proteins [BR:vaa03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AX767_19475
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AX767_19475
DNA repair and recombination proteins [BR:vaa03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AX767_19475
   NER (nucleotide excision repair)
    Other NER factors
     AX767_19475
   MMR (mismatch exicision repair)
    Other MMR factors
     AX767_19475
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AMM26894
UniProt: A0A126ZJZ0
LinkDB All DBs
Position
complement(4038743..4039594)
Genome map
AA seq 283 aa AA seqDB search
MLNRRSWLLAALAAATAPVAFARETAPALMLADVYQRGMSLDDYWVSEKYDGVRGYWDGK
QLWTRGGERVIAPAWFTAGFPATPMDGELWAGRGQFTQAMSTVRSQTPVDAAWREIRFMV
FDLPAQPGDFSARLSALRKLLPITSAPWLLPVAQQRATSHAELQALLDKTVKLGGEGLML
HRGNSMYRGERSAALLKFKPYDDAEARVVAMVPGKGRHDGRMGALWVESPEGRRFKLGSG
FSDAERNNPPAIGSWVTYRYNGTNPGGLPRFARFLRVRPDIPS
NT seq 852 nt NT seq  +upstreamnt  +downstreamnt
gtgttgaaccgcagatcctggttgttggcggccctggccgccgcgacggcgcccgtcgca
ttcgcgcgcgaaacggcacctgcgctgatgctggcagacgtctaccagcgcggcatgtcg
ctcgacgactactgggtcagcgaaaaatacgacggcgttcgcggctattgggacggcaag
caactctggacgcgcggtggcgagcgggtcatcgcgccggcctggttcaccgccggtttt
ccggcgacgccgatggacggcgaactgtgggccggacgtggccagttcacgcaggcgatg
tcgacggtgcgcagccagacgccagtcgatgcggcctggcgcgaaatccgcttcatggtg
ttcgacctgcccgcgcagcccggcgatttcagcgcccgactcagtgcactgcgcaagctg
ctgccgatcacgagcgcgccctggctgctgcccgtcgcgcaacagcgcgccacgtcgcac
gccgagctgcaggcgcttctcgacaagacggtcaagctcggcggggaaggcctgatgctt
caccggggcaactccatgtaccgcggcgagcgaagcgctgcgctcctcaagttcaagccg
tacgacgacgcggaagcgcgcgtggtggcgatggtgcccggcaagggccgtcacgacggc
cgcatgggcgcgctgtgggtggaatcaccggagggccgacgcttcaagctcggcagcggc
ttcagcgatgcggaacgcaacaacccgccggccatcggcagttgggtcacctaccgctac
aacggcacaaaccccggcggtctgccgaggtttgcgcgcttcttgcgtgtccgtcccgac
attccctcctga

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