KEGG   Vibrio alginolyticus: N646_0534Help
Entry
N646_0534         CDS       T02840                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vag  Vibrio alginolyticus
Pathway
vag03030  DNA replication
vag03410  Base excision repair
vag03420  Nucleotide excision repair
vag03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    N646_0534
   03410 Base excision repair
    N646_0534
   03420 Nucleotide excision repair
    N646_0534
   03430 Mismatch repair
    N646_0534
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vag03032]
    N646_0534
   03400 DNA repair and recombination proteins [BR:vag03400]
    N646_0534
Enzymes [BR:vag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     N646_0534
    6.5.1.6  DNA ligase (ATP or NAD+)
     N646_0534
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     N646_0534
DNA replication proteins [BR:vag03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    N646_0534
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     N646_0534
DNA repair and recombination proteins [BR:vag03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     N646_0534
   NER (nucleotide excision repair)
    Other NER factors
     N646_0534
   MMR (mismatch exicision repair)
    Other MMR factors
     N646_0534
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AGV16367
UniProt: A0A2I3C1Q3
LinkDB All DBs
Position
1:602764..603609
Genome map
AA seq 281 aa AA seqDB search
MPLKMTLIALAVMAASSQPQADMSLAPPVSLAQSYQDGIDVSEYWYSEKLDGVRAYWTGQ
HLVTRNGNRIYAPDWFTGPLPDYPLDGELWAGRGNFHLVQQTVLDKTPVESAWRHIDFMI
FDMPYSAGDYRKRYYNIKDLVLEVDQPHIKYVEHRAIQNEAHLFTQLDKISISDGEGVML
RKVSSRYQAGRGSDLLKLKRYADDEALVVGYKPGTGRLLGMMGAMLVRLPNGIEFYIGSG
FTDEVRRQPPKIGSTITFRYNGFTHTGKPRFARFLRERLKE
NT seq 846 nt NT seq  +upstreamnt  +downstreamnt
atgccattaaaaatgacattaattgcgctggctgttatggcagcgtcttcacagcctcaa
gcggatatgtctctcgcaccaccagtttctcttgcacaaagctatcaggatggcattgat
gtgtctgaatattggtatagcgaaaaacttgatggtgttcgcgcttattggactgggcaa
catctcgtgacgagaaatggtaatcgaatctacgccccagactggtttacaggacctttg
cctgattatccgttggacggtgaactttgggctgggagaggtaacttccatcttgttcag
caaacggtattagataaaactcctgtagagtctgcttggcgacacatcgactttatgatc
tttgatatgccatattctgctggtgattatcggaagcgttattacaacatcaaagactta
gtgcttgaagtcgaccagcctcatatcaaatatgtcgagcaccgagcgattcaaaatgaa
gctcatctgtttacacagttggataaaatttcaatatccgacggtgaaggggtgatgttg
cggaaggtatcaagccgctatcaggctggacgcggtagtgatttgcttaaactaaaacga
tacgcagatgatgaagcgttagttgtgggttataagccaggaacagggcgcttattaggt
atgatgggagcaatgttagttcgcttaccaaatggcattgagttttacatcggtagcgga
tttaccgatgaagtgcgtcgccagcctccgaaaattggttcaaccattacatttagatat
aacggttttacacatactggtaaaccacgttttgctcgattcttgcgtgaaaggttgaag
gaatag

DBGET integrated database retrieval system