KEGG   Verticillium alfalfae: VDBG_03075Help
Entry
VDBG_03075        CDS       T02227                                 

Definition
(RefSeq) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
val  Verticillium alfalfae
Pathway
val03030  DNA replication
val03410  Base excision repair
val03420  Nucleotide excision repair
val03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VDBG_03075
   03410 Base excision repair
    VDBG_03075
   03420 Nucleotide excision repair
    VDBG_03075
   03430 Mismatch repair
    VDBG_03075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:val03032]
    VDBG_03075
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_03075
Enzymes [BR:val01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VDBG_03075
    6.5.1.6  DNA ligase (ATP or NAD+)
     VDBG_03075
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VDBG_03075
DNA replication proteins [BR:val03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VDBG_03075
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VDBG_03075
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VDBG_03075
   NER (nucleotide excision repair)
    Other NER factors
     VDBG_03075
   MMR (mismatch exicision repair)
    Other MMR factors
     VDBG_03075
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C NuDC ATP12
Motif
Other DBs
NCBI-GeneID: 9533086
NCBI-ProteinID: XP_003006936
UniProt: C9SD01
LinkDB All DBs
AA seq 708 aa AA seqDB search
MPSPTKKRKLNKDASGPTSRGLEYFFSKQKQGDSSAASTPPQLKQDVGEAPKSEQELTDE
ELARKLQAEWDSEVQNTETLSAESQLVLRCSASPALDPSSTASAQVAKSAATPVKKHACK
YRTEDSHAIKDQDSGHSCEFHQTYHSDGSRKSPPRCLASDKRHFAALHFLGIGSCGSAIS
KALKQVCGLNGPSLKNLYDKYGDAGDVAFEAKKKQSFTLRKPKPLTIKAVYQSLVKIANT
QGQGSGEVKQRIVDRLLQDARGGEESRYIVRTLCQHLRIGAVKTTMLIALARAFSITSPP
GADFAVRDRGSLAKLKKEELVEVWAKAEEIVKACFAKRPNYNDLVPILLEIGVCDELLLR
CGLTLHIPLRPMLGSITRDLTEMLTKLQGGDFACEYKYDGQRAQIHCDVKGKVSIFSRHL
ELMTDKYPDLVALMPQIRGEGVDSFVMEGEVVAIDRQTGDMKNFQALTNRARKDVAIGSI
QVDVCMYSFDLMYLNGEPLLDRPFRERRELLRSMFIEVPHQFTWVKSLDATSQDSDAVLD
FFKSATDVKCEGIMVKILDNLTEIPYQGGEVDAPVDEMEEPHTPSKRKVTGKTAENGAKK
KTRRKPLLATYEPDKRLDSWLKVKKDYNASFDTIDMVPVAGWHGQGRKAKWWSPILLAVR
NEDSGSFEVVCKCISGFTDTFYKAIGFYDDVAEEAALYKYSFLKACLY
NT seq 2127 nt NT seq  +upstreamnt  +downstreamnt
atgccgagtccgacgaagaagcggaagctcaacaaggatgcaagtggcccaacatcgcgt
ggtcttgagtatttcttctcgaaacagaagcaaggcgactcatcggctgcttctacaccg
ccacaactaaagcaggatgtgggcgaggctcccaaaagtgaacaggaactcaccgatgag
gagctagcccggaagcttcaagctgaatgggatagcgaggttcaaaatacagaaactctt
tcggctgagtctcagctagttctgcgttgtagcgcaagcccagctctcgatccaagttct
accgcttcagctcaagtcgcgaaatcagccgccacgcccgtgaagaaacacgcttgcaag
tacaggaccgaagactctcacgcaatcaaggatcaagatagtggacactcttgtgaattt
catcagacttatcactcagacggatcccgaaagtctcctccccgctgtttggctagcgac
aaacgccatttcgccgccctacatttccttggaattgggtcttgtgggtcagccatatcc
aaagctctgaagcaagtttgtgggctcaatggaccctcgctaaagaatctctacgacaag
tacggcgatgcgggagatgtggccttcgaagccaagaagaaacagagcttcacgcttcgg
aagccgaagccgctgaccatcaaggctgtctaccaatctctggtcaagattgccaacacc
caaggtcagggcagtggtgaagtgaaacagagaatcgtcgatcgtctgcttcaagatgca
agaggtggcgaagaaagcaggtacattgttcgtacactttgccaacatcttcgtatcggc
gctgtcaaaaccacgatgctaatcgcgcttgcccgggcgttttctatcacttcccctcct
ggtgcagattttgctgtccgcgacaggggcagcctcgccaagttgaaaaaggaggagctt
gtagaggtttgggcaaaagcggaggagattgtaaaagcctgcttcgcgaaaaggccaaat
tacaacgaccttgtacccattcttctcgagattggtgtttgtgatgagcttctcctccgc
tgtgggctcaccctgcatattcccctccgacccatgcttggtagcataacgcgagatctt
acggagatgcttaccaagctccaaggcggggatttcgcctgcgagtacaagtatgacggt
cagcgtgcccagattcactgcgacgtcaagggaaaagtaagcatcttctcgaggcatctt
gaactgatgacggacaagtaccccgacttggttgccctcatgccgcagattcggggtgaa
ggtgtcgacagctttgtgatggagggagaggttgtggcaatcgaccggcagacgggagat
atgaaaaacttccaagctctgaccaaccgcgccagaaaagatgtcgcaatcgggagtatt
caagtcgatgtctgcatgtactccttcgacctgatgtacctcaatggggagccactactc
gacagacctttccgcgaaaggagagagctccttcggtcgatgtttatcgaggtcccccac
cagtttacatgggtcaagagcctagacgctacttcgcaggattccgatgcagtgctcgac
ttcttcaaatctgctaccgacgtcaagtgcgagggtatcatggttaagattctggacaat
ttgaccgagataccttaccaagggggcgaggttgacgcccctgtggatgagatggaggaa
ccacatacaccttcaaaacgtaaggttacggggaagaccgctgagaatggcgcgaaaaag
aaaacgcgacgtaaaccgctgctggcaacctatgagcccgataagcgactcgactcatgg
cttaaggtcaagaaagattacaacgcaagtttcgacaccattgatatggtccctgtggct
ggttggcatggccaagggcgcaaggccaaatggtggtcgccgattctgcttgctgtccgc
aacgaagacagtggctcgtttgaggttgtgtgcaaatgcatatcaggctttaccgatacc
ttttacaaagctataggattttatgacgacgtagcggaagaagcggcgttgtacaaatat
tcgttcctcaaagcctgcctttattga

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