Verticillium alfalfae: VDBG_04764
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Entry
VDBG_04764 CDS
T02227
Name
(RefSeq) ATP-dependent helicase SGS1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
val
Verticillium alfalfae
Pathway
val03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VDBG_04764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
val03032
]
VDBG_04764
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_04764
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VDBG_04764
DNA replication proteins [BR:
val03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
VDBG_04764
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
VDBG_04764
Bloom's syndrome complex (BTR)
VDBG_04764
FA (Fanconi anemia) pathway
VDBG_04764
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RQC
ResIII
HRDC
Polysacc_synt_3
Motif
Other DBs
NCBI-GeneID:
9530377
NCBI-ProteinID:
XP_003005158
UniProt:
C9SI82
LinkDB
All DBs
AA seq
1714 aa
AA seq
DB search
MTRNNLGDHLAWLLGNIAITKPSCPSYPPSLSLSQSQLKPASFEAKSSLSNIAVKRAHCA
PNEIAAAAHANVTPKRTARDPGGAPNAQEDMAKLTSASKPHKPSLLSKNQQLPTPDPSTN
VGGALQRAYKAQLEEQHAGHSLRSPAPAKREPVSQSKPTGTRSITAPQAVHPRIKTSQTP
TRDLPTLDDFDLSDVMDLTGDDTVISSDSINFGDEVKIWNEVHGKRSEPPSHRGQKRKSM
DVADMDDFNSDDEFPDLYDILETPAPKSNKATKVTEVTTPSLLETHDQAVRPSTTRIQKI
YRQASDDGNPGTPRRPMPLSHHDQYLGRTPSKALVLSSSPNTCEPVDSTPDACQIKGTPA
PGLVKKRRIIQDSDDDEPNDEWITPPSRHVSIAQQDHDVLRALQSPTTDDELMALETPSR
AEPAHAPPTTKMTAPTQPAKQEALSRPISQSQSSGPLVGSQIPGDPDPAVLEWFLRTELV
LEAKTKNLETRITKNSEAFGILLKQGGTKEDRQKVKSEKKVLLAQKEALKSVQAVAEQLK
PLQDERQLLAVQLAEAYDAGLDTDDDESRLDDISDSIKALEQTYLPLLPAAGIDADFMAE
HEHTSAPTVHFEDSVILNTQPSHPGAGQNIHSRNALPCTEVIQQTQFSSTPQYRQSSPPP
FPRTSTRTPKDSQISYDRTPAGHILVEDDAEDFFDDIEESDLSAMTPSFSAVPAFKPSRG
ISAKPSSRPDTFSDGFDDDDAMVAMAEAHETNEIPSNNMLSGRPILAKTSGNAVTSSKPK
AVPKKREAAVLKASIPAELLKHRWSEDVTKALKDRFRMRGFRTNQLEAINATLAGKDAFV
LMPTGGGKSLCYQLPAVVTSGKTKGITVVVSPLLSLMQDQVDHLTALGIKAKAFSSAIQA
PARREILEFMNSPYPDHQFTMLYVSPEMLNASAQFERALTNVYRNQKLARFVVDEAHCVS
QWGHDFRPDYKDLFKLRSNYPSVPIIALTATATTNVIVDIQHNLQIDKCQVFTQSFNRPN
LTYAVERKEKGLIETIAQLIQSKYNNQTGIIYVLSRKNTEDVATKLRDNYGISASHYHAA
MKPEEKWNVQRRWQKGSIKVVVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGR
DGKPSDCILYFGYGDVFTLKKMINDGDGSEEQKERQRGMLNRMSTYCDDQKDCRRVTILR
YFGEAFNVADCNKTCDNCLHKGVFEERDFSEFAIAVIETIKAHKYLTINQCADILLGKKR
PKTIDDNLDDNHGLIKGRLAKHEIERLVDKLLAESALREENTFNKHAKIAIQYIYVGVNA
NKYISGRSKLMMSVKVSNKDKESSAPKPRKRTKKDSADGGDKPMSGQSRLPPSTNVSSPA
TGKTTRRPKGKTTVLDEESDLEERDANAHINGYERDEFVVSDDSDDGFEPRPAARRRKVA
VPLGPRISQEDRLRELEDWQQDLIENFVRDAKVLEEKLRNQQQLRKPLFSEAILREMAIN
RTTTLAKMRAISGIDAERVTKFGSKFLPLIKSCEALYEQADEQDDTEGSALYAGQGADAI
TISDEDGEETEDLDDEEREQPSKYFRGASEHDESEPEVPSPKAARAWESRFGATAGPRGG
SYRGGGGRRGGFRAGSRGSSRKASGSRKQSSEYTRRGSSRGSRGSGVTKRRASGSARGGG
SAATSGASRSSLISSYAYRGGGKSGGSGIGLMPT
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgacgcggaacaacctcggagaccatcttgcttggctcttgggcaacatcgccatcacg
aaaccttcatgtcctagctaccctccgagccttagcttgtcgcagtcccagctgaagccc
gcaagcttcgaggccaagtcgagtctgtccaatattgccgtcaagcgagcgcactgcgca
ccgaatgaaatagcagctgccgcccatgccaacgttacgccgaaacgtactgctcgggat
cccggaggggcaccgaacgctcaggaagacatggcgaaattgacgtcggcgtcgaagcct
cacaagccatctttgttgagcaaaaatcaacaactccccacacccgacccctcgacaaac
gtgggcggtgccttgcaacgggcatacaaggctcaactcgaagaacagcatgcgggtcat
agcctgcgttcccctgcccctgcaaagcgcgagccagtctcgcagagcaagccaacaggg
accaggtcaatcacggctccgcaagctgtgcatcctagaatcaagaccagccaaacacca
acacgggacttgccaaccctggatgactttgacttatccgatgtgatggatctcacaggg
gatgatacagtcatctcctcggattcaatcaactttggcgacgaagtcaagatttggaac
gaagtccacggcaagaggtcggagccgccgtcacacaggggccagaagaggaagagcatg
gatgttgccgacatggatgatttcaattcggatgatgagtttcccgacctctacgacata
ctcgagactcctgctccgaagagcaacaaagcgaccaaggtcacagaagtcactactccg
agcttgttggaaacacatgaccaagccgtgcgcccttcaacgacccgaattcagaaaata
tatcgacaagcaagtgatgatggcaatcctggcacgcccagacgacccatgcctctctct
catcacgatcaatatctgggaagaacgccaagcaaagcgcttgtcctatcatcctcgccc
aacacatgtgagcccgtggattcaacgcccgatgcttgtcagattaagggcacgccagcg
cccggcttggtcaagaaacgccggattatccaggactcagacgacgacgagccaaatgac
gaatggattacacccccgagtcgacatgtctccatcgctcagcaagatcatgatgtgttg
agagcattgcagtcgcctacgacagatgatgagctgatggctctggaaacaccctctcga
gctgagcctgctcatgcccccccaacgacgaagatgacagcccccactcagcctgcaaaa
caggaggcattatcaagaccaatatcccagtcgcaatcgtcggggcctctagttggttca
cagattccaggtgatcctgatcccgccgtcctggaatggtttctcaggacggagttggta
ttggaggcaaagacgaaaaacttagagacacgaatcactaagaacagcgaggctttcggc
atactcctgaagcaaggcgggacaaaagaagatcgccagaaggtaaaaagtgagaagaag
gtcctgctagcacaaaaagaagcgctcaaaagcgtccaagctgtcgccgaacagcttaag
ccccttcaggacgagcgtcagttgctcgctgttcagctagccgaagcatacgatgctggc
ctcgataccgatgatgatgagagtcgtttagacgatatctccgacagcatcaaggctctc
gagcagacgtatctacctctccttcccgcagcgggtattgatgccgattttatggctgaa
catgagcacacctcagcgccaaccgtgcatttcgaagattcggtcattctcaacacgcag
ccatcccacccaggtgctggtcaaaacatacactcccgaaatgcgttaccatgtaccgag
gtcatccaacagacccaattctcatctacgccacaatacagacagtcatcccctccccca
tttccacggacatccacacggactcctaaagattcccagatttcgtatgatcgaacacca
gctgggcacatccttgtagaagatgacgctgaagacttcttcgacgatattgaagaatcc
gacctgagtgcaatgacgccatcattttcagctgttccagcgttcaagcccagccgtgga
atttcagcgaaaccgtcgtccaggcccgacacgtttagcgacggctttgacgatgatgat
gcgatggttgccatggcagaagctcacgagacgaacgaaataccgtccaataacatgctc
agtgggcgtccgattctcgccaaaacatcaggaaatgcggtcacgtcgtcaaaacccaag
gctgtgccgaagaaacgggaggctgcagtcctgaaggcatcgattccggccgagttacta
aaacatcgttggtccgaggacgtgaccaaggccctcaaggacaggttcagaatgcgtggc
ttccgaaccaaccagctcgaggccatcaacgcgacgctagccggcaaagatgcattcgtt
ctcatgccaactggcggaggtaaatccctgtgctaccaattgccggccgtggtcaccagc
gggaagacgaaaggcatcactgttgtcgtttcgccactactcagtctgatgcaggaccaa
gtcgaccatctcacggcgcttgggatcaaggctaaggctttcagcagtgccatccaggcc
ccagctcgacgagagatattggaattcatgaacagcccgtatcccgatcatcagttcacc
atgctttacgtcagtcctgagatgctcaacgctagcgcacaatttgagcgcgcactcacg
aacgtctatcggaaccagaagctggcgcgtttcgtcgtggacgaggcacactgcgtcagc
cagtggggtcatgacttccgacccgactacaaagacctgttcaaactgcgcagtaactat
cccagcgtgcccatcattgccctgactgctactgctaccaccaatgttatcgtggatatc
cagcacaatctgcagattgacaagtgccaagtctttacgcaaagtttcaatcggccgaat
ctgacttatgctgtcgagagaaaggagaaaggccttatcgaaacaatagctcaactgatc
caaagcaagtacaataaccagacgggtattatatacgtcttgtcgcgcaagaacacagag
gacgtggccacgaagcttcgcgacaactatggcatctctgcaagccattaccacgcggct
atgaagcctgaggagaagtggaatgttcagagaagatggcaaaagggcagcatcaaggta
gtggttgctactattgctttcggaatgggcattgacaagcctgacgtgcgatttgtcatt
catcactctcttcccaaaagtcttgaagggtactaccaagagaccggacgtgcgggcaga
gacggcaaaccgtccgattgtatcctgtactttgggtacggcgacgtcttcaccctgaag
aagatgatcaacgacggcgacggtagtgaggaacaaaaggagcgacagcggggcatgctg
aaccgcatgtcgacgtactgtgatgatcagaaagactgtcgtcgagttacaattctccgc
tacttcggcgaagcatttaatgttgcggactgtaacaagacttgcgataactgtcttcac
aagggcgtgtttgaggagcgggatttcagcgagttcgccattgccgttattgagacgatc
aaggcgcacaagtacctgactatcaatcagtgcgcggatatcctgctgggcaagaagcgt
ccgaagacgattgacgacaatcttgacgataaccacggccttatcaaaggtcgcttggca
aagcatgagattgagagactggtggacaagcttcttgccgaatctgctcttcgggaggag
aacacattcaacaagcatgccaaaatagcgatacagtacatctatgtgggcgtcaacgcc
aacaagtacatcagcggtcgcagcaagttgatgatgtcggtcaaggtttccaataaggat
aaggaatcatcggcaccgaagccgcgcaagcgaacgaagaaggattcggcagatggcgga
gacaagcccatgtctggtcagtcgcggcttccgccatcgaccaatgtttcctccccagcc
acgggcaaaactacacgaagaccaaaggggaagactacggtgctcgatgaagagagtgat
ttggaagaaagagatgccaacgctcacatcaacggctacgagagagatgaattcgtcgtt
tcagacgattccgatgacggatttgaaccaaggccggcggccaggagacgcaaagtcgct
gtcccgcttggacctcgtatctcgcaggaggatcgcttgcgcgaactcgaggactggcag
caggatctcatcgaaaactttgttcgagacgccaaggtgctagaagagaagctacgtaac
cagcaacagctgaggaaaccgttattctcggaggcgatactgagggagatggccatcaac
cgcacgacaacgttggccaagatgcgagcgatttccggcattgatgccgaacgcgtcact
aaatttggcagcaaattcttgccgctcatcaagagctgcgaggcactctacgagcaagca
gacgaacaagacgacaccgagggatcggctttgtatgctggccaaggcgccgacgccatc
actatcagcgatgaagacggcgaggagacggaggatctcgatgacgaggaacgagagcag
ccttcaaagtatttccgcggggcttcggagcacgatgaatcggagcctgaggttccttca
cccaaggcagcacgtgcgtgggagtcgagattcggggccaccgcaggccctcgagggggc
tcctaccgcgggggcggtgggcgtcgcggtggctttcgagcgggcagccgtggaagcagc
aggaaggccagcggttcacggaaacagtcgtccgagtacacgagacgaggcagcagcaga
ggcagcagaggcagcggcgtgacgaagcgcagggcttcgggcagcgcgcgaggcgggggt
tctgctgcgacatcgggcgcctcccggtcgtctctcatctcaagctatgcctataggggt
ggcggcaagtcggggggcagcggtattgggctgatgccgacctga
DBGET
integrated database retrieval system
