KEGG   Verticillium alfalfae: VDBG_08697Help
Entry
VDBG_08697        CDS       T02227                                 

Definition
(RefSeq) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
val  Verticillium alfalfae
Pathway
val03030  DNA replication
val03410  Base excision repair
val03420  Nucleotide excision repair
val03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:val00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    VDBG_08697
   03410 Base excision repair
    VDBG_08697
   03420 Nucleotide excision repair
    VDBG_08697
   03430 Mismatch repair
    VDBG_08697
Enzymes [BR:val01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VDBG_08697
    6.5.1.6  DNA ligase (ATP or NAD+)
     VDBG_08697
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VDBG_08697
DNA replication proteins [BR:val03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VDBG_08697
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VDBG_08697
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VDBG_08697
   NER (nucleotide excision repair)
    Other NER factors
     VDBG_08697
   MMR (mismatch exicision repair)
    Other MMR factors
     VDBG_08697
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 9534289
NCBI-ProteinID: XP_003000901
UniProt: C9SUX2
LinkDB All DBs
AA seq 893 aa AA seqDB search
MAPKQATLGKFFGGQDGPKAKPQQSKLSFAARPAPKKQVKAEEDEVANKENGAASAGVKG
EDGPKKDSKKRAHADEDQDGKSSNKTVKTEEVSADEDDAPVVKRARRNRNRIEDDEDEGM
EEVPAPKPSPKTSPKKSKRASKSRSPSPKRAKASPTPVQASEDSEVESVGSAEDDLDGES
SAGSEAEDAGDAAKTVLKPKGKGKTAKGGKSAAQLLGDLTAQTKDPYPDWKKGDPVPYAA
LCKTFSLVELTTKRLEIMAHCSKFLRQVLRLTPDDLLPTVLLMINKLAPDYAGIELGIGE
SLIMKAIGESTGRTLQIIKQDQKEIGDLGLVAVKSRSTQPTMFKPKPLTVRGVHKGLMGI
ATVTGNGAQGRKVDGIKKLLSSADAAGGKVDISKDKGGPSEAKFLIRFLEGKLRLGLAER
TVLVSLAQAVVNHEASAKDLVASPEDVEKAEAMLKTVYSELPSYDVIIPAMVEHGIMNLR
EHCKLKPGVPLKPMLAKPTKAITEVLDRFENQTFTCEYKYDGERAQIHYVAKSADEELSE
SMPGATKEAANGVANIFSRNSEDLSKKYPDILAKLHTWVKPDTKSFVLDCETVAWDVVEK
KVLPFQQLMTRKKKDVKIEDVKVKVCVFAFDLLYLNGEALVEKSLRHRRDLMVEAFAPVE
GEFSLATSMDGQELEQIQEFLDESVKASCEGLMVKMLDGTESGYEPSKRSRNWLKIKKDY
LAGIGDSLDLVVLGAYHGKGKRTSVYGAFLLACYNPSGEVYETVCNIGTGFSEAVLEELH
KQLSEIVIDRPKPFYSHSAGGQHQPDVWFEPRCVWEVKTADLTLSPRYKAGAKEGVDPSG
EKGISLRFPRFIKIRDDKKPDEATSSRQVAEMYRKQESVTKSKGPAVDDDFEY
NT seq 2682 nt NT seq  +upstreamnt  +downstreamnt
atggcgccgaagcaagctacgctgggaaagttctttggcggccaggatgggcccaaggcg
aagccgcagcagagcaagctgagcttcgcggcgaggccagcgcccaaaaagcaagtcaag
gctgaggaggacgaggttgctaacaaggagaatggcgctgcgtctgcgggtgtcaagggg
gaggatggccctaagaaagattcgaagaagcgagcgcatgcagacgaggaccaagatggc
aagtcctccaacaagaccgtcaaaacagaagaggtctctgcggatgaagacgacgccccg
gttgtgaagcgtgcgagacggaaccgcaatcgcattgaggacgacgaagacgagggcatg
gaggaagtgccggcccccaaaccgagccccaagacgagtcccaagaagagcaagcgagct
tccaagtccaggtcaccttcgcccaagcgtgccaaggcctccccgaccccggtacaagcg
tcagaagattctgaagtagagtctgtgggctcggctgaggatgacctggacggcgaatct
tccgcaggttctgaagctgaggatgctggggacgctgccaagacggtcctcaagcccaaa
ggcaaaggcaagactgcaaagggcggtaagtcggccgcacagttgctgggagacctgaca
gcccagacgaaagacccatatccagattggaagaagggcgatcccgtaccgtacgccgcg
ctctgcaagacattctccctggtcgagctcacaacaaagcgactggaaatcatggcgcat
tgctcaaagttcctccgtcaggtcttgcgtctcacaccagatgacctgctccccacagtc
ctcctcatgatcaacaaacttgcgccagattatgcgggcattgaactcggcatcggagaa
tctctcatcatgaaggccattggcgagtcgacaggtcgtacccttcagatcatcaaacag
gaccaaaaggaaattggtgatcttggtctcgtagccgtgaagagcaggtccactcaacct
accatgttcaagcccaagcccctcactgtccggggcgtgcacaagggtctcatgggtatc
gcgacggtgacgggcaacggcgcacaaggccgcaaagttgatggaatcaagaagcttctt
tcctccgcagacgcagcgggtggaaaggtggatatctcgaaggacaagggtggaccgagc
gaggccaagttcttgatccgcttcctcgagggcaagcttcgtctcggcctcgctgagagg
accgttctggtctcgctggcgcaggctgtcgtgaaccacgaagcttccgccaaggacctt
gttgcgagccccgaggatgtcgaaaaggccgaggccatgctcaagacggtttacagcgag
ctccccagctacgatgtgatcatccccgccatggttgagcacggcatcatgaacctccgc
gaacactgcaaactcaagcctggtgtgcctttgaagcccatgttggccaagcccaccaaa
gctatcacggaagtcctggatcgcttcgagaaccagacatttacctgcgaatacaagtac
gacggtgagcgggctcaaattcactatgtcgccaagtccgcggatgaggagctcagcgag
tccatgcccggcgcaacgaaggaggcagccaacggcgtggccaatattttctcgaggaac
tcagaagatctgtccaagaagtatcccgacattctcgccaagctccatacttgggtcaag
cctgacaccaagagcttcgttcttgattgcgagactgttgcttgggacgttgtggagaaa
aaggttcttccgttccagcagttgatgacgcggaagaagaaggacgtcaagattgaggat
gtcaaggtcaaggtgtgcgttttcgcgtttgatctgctctacctcaacggcgaggctctg
gttgagaagtctcttcgacatcgtcgtgatctgatggtcgaggcctttgcacctgtggag
ggcgagttctcgctcgccacgtctatggatggccaggagctcgagcagatccaagagttc
ctggatgagagtgtcaaagcttcctgtgagggtcttatggtcaagatgctggacggaaca
gagagcggatacgagcccagcaaaaggagtcgcaactggctcaagatcaagaaggactat
ctcgccggcattggcgactcgctcgatctcgttgttctgggtgcgtaccacggcaaaggc
aaacgtacgtccgtctacggcgccttcctcctcgcctgttacaacccgtcaggcgaggtc
tacgaaacggtctgcaacatcggcaccggcttctccgaggccgtgctcgaggagcttcac
aagcagctgtccgaaattgtcattgaccgcccgaagccgttttactcccactcggccggc
ggccagcaccagcctgatgtttggttcgagccccgctgtgtctgggaggtcaagacggcg
gatctgacgctcagcccgcgctacaaggccggcgccaaggaaggcgtcgatccgtcgggc
gagaagggcatctcgctccgcttcccgcgtttcatcaagattcgcgacgacaagaagccg
gacgaggcgacgagcagccgtcaagttgccgagatgtaccgcaagcaggagtctgtgacc
aagagcaagggaccagctgtcgacgatgactttgagtactaa

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