KEGG   Verticillium alfalfae: VDBG_09222
Entry
VDBG_09222        CDS       T02227                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
val  Verticillium alfalfae
Pathway
val03022  Basal transcription factors
val03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    VDBG_09222
  09124 Replication and repair
   03420 Nucleotide excision repair
    VDBG_09222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:val03021]
    VDBG_09222
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_09222
Transcription machinery [BR:val03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     VDBG_09222
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     VDBG_09222
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 9529087
NCBI-ProteinID: XP_003000727
UniProt: C9SWE7
LinkDB
AA seq 476 aa
MSAGLTKSLQLADYLEKLPGTTFRKLYLNPSTALCISRRMLSPLAKTFVTMLLYLPGPIP
IADLEARVKPEYKRAKDHALAQLRSLHMLQMSVPTQGAPQMIQLTANFSKSYREALEGNG
APGSFGVISPHPRSPEITIESIEKHARQKWDAILHYIVNSVTPGFVDSGGPKNSVKELLL
AGQLVKRQGGSTTITQAGFTFLLQEENAQVWTLLLLWLDATDQQTAKHTDMLSFLFQLSI
LELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVSTATRTLTD
GMNALSQSQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTR
QSVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKT
TSGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFFASKHEQIRDYLKLRKKA
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgtcggccggcttgacgaagtcgctccagctggccgactacctggagaagctgcccggt
acaacgtttagaaagctgtacctgaacccctccacggcattatgcatctcaagacgcatg
ttgtcgccactggccaagacatttgtgacaatgctcctataccttcccggaccgatacca
atagcagacctcgaggcgcgcgtgaagcccgagtacaagagagccaaagatcatgctctc
gcacaactccgaagtctacacatgttacagatgtctgttccaacacaaggcgctccgcaa
atgatacagctcacggccaacttttcgaagtcctaccgcgaggccctcgaaggcaacgga
gcaccaggctccttcggcgtgatctctccgcacccgcgctcacccgaaatcacgattgag
tcgatcgagaaacacgcacgccagaaatgggacgccattttacactacattgtcaacagc
gtgacgcccggcttcgtcgacagcggcggtcctaagaactccgtcaaggagcttctcctc
gcgggccagctcgtcaagcgccaaggcggcagcaccacaatcacgcaggctggcttcaca
tttttgctgcaagaagaaaacgcgcaggtctggacgctgctgttgttgtggctcgacgcg
accgaccagcaaacggccaagcatacggatatgctctctttcctgttccagctctcgatc
cttgagctcgacgaggtctacgacaccgaagccctcagcaaagagcgccaagacatgctt
ccgagcctcatggactttggcctagtctacataccctcccacaaacccttccagtacttt
gtcacgccccaagcacgcgccctcactaacgtatcgacggcgacgcgcaccctgaccgat
ggtatgaacgccctgtctcaatcccagggcggaccaggcgaccagacgaacggcatcatc
gtcgagaccaattaccgagtctacgcgtacacaacgtcgcagctgcagatcgccgttctc
tccctcttctgccacctctccgtcaagttcccaggcatggtctcgggtcgtctgactcgc
cagtccgtccgccaggccatcgactttggcatcacagccgaccagatcatctcctacctc
gccgcccacgcccacgagcagatgcacaggcaggccgccgccgacggcaagcccgtcctc
ccgcccaccgtcgtcgaccagatccgcctctggcaactcgagaacgagcgcatgaagacg
acgtctggcttcctcttccgcgactttgacgacgatgccgagtacagggatatcgcgcgg
ttcgccgacgagattggcgtgctggcgtggcggaacgatcggaagcgcatgttcttcgcg
agcaagcatgagcagatccgcgattatctcaagctgcggaagaaggcgtag

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