Verticillium alfalfae: VDBG_09222
Help
Entry
VDBG_09222 CDS
T02227
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
val
Verticillium alfalfae
Pathway
val03022
Basal transcription factors
val03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VDBG_09222
09124 Replication and repair
03420 Nucleotide excision repair
VDBG_09222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_09222
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_09222
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VDBG_09222
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VDBG_09222
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
9529087
NCBI-ProteinID:
XP_003000727
UniProt:
C9SWE7
LinkDB
All DBs
AA seq
476 aa
AA seq
DB search
MSAGLTKSLQLADYLEKLPGTTFRKLYLNPSTALCISRRMLSPLAKTFVTMLLYLPGPIP
IADLEARVKPEYKRAKDHALAQLRSLHMLQMSVPTQGAPQMIQLTANFSKSYREALEGNG
APGSFGVISPHPRSPEITIESIEKHARQKWDAILHYIVNSVTPGFVDSGGPKNSVKELLL
AGQLVKRQGGSTTITQAGFTFLLQEENAQVWTLLLLWLDATDQQTAKHTDMLSFLFQLSI
LELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVSTATRTLTD
GMNALSQSQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTR
QSVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKT
TSGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFFASKHEQIRDYLKLRKKA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccggcttgacgaagtcgctccagctggccgactacctggagaagctgcccggt
acaacgtttagaaagctgtacctgaacccctccacggcattatgcatctcaagacgcatg
ttgtcgccactggccaagacatttgtgacaatgctcctataccttcccggaccgatacca
atagcagacctcgaggcgcgcgtgaagcccgagtacaagagagccaaagatcatgctctc
gcacaactccgaagtctacacatgttacagatgtctgttccaacacaaggcgctccgcaa
atgatacagctcacggccaacttttcgaagtcctaccgcgaggccctcgaaggcaacgga
gcaccaggctccttcggcgtgatctctccgcacccgcgctcacccgaaatcacgattgag
tcgatcgagaaacacgcacgccagaaatgggacgccattttacactacattgtcaacagc
gtgacgcccggcttcgtcgacagcggcggtcctaagaactccgtcaaggagcttctcctc
gcgggccagctcgtcaagcgccaaggcggcagcaccacaatcacgcaggctggcttcaca
tttttgctgcaagaagaaaacgcgcaggtctggacgctgctgttgttgtggctcgacgcg
accgaccagcaaacggccaagcatacggatatgctctctttcctgttccagctctcgatc
cttgagctcgacgaggtctacgacaccgaagccctcagcaaagagcgccaagacatgctt
ccgagcctcatggactttggcctagtctacataccctcccacaaacccttccagtacttt
gtcacgccccaagcacgcgccctcactaacgtatcgacggcgacgcgcaccctgaccgat
ggtatgaacgccctgtctcaatcccagggcggaccaggcgaccagacgaacggcatcatc
gtcgagaccaattaccgagtctacgcgtacacaacgtcgcagctgcagatcgccgttctc
tccctcttctgccacctctccgtcaagttcccaggcatggtctcgggtcgtctgactcgc
cagtccgtccgccaggccatcgactttggcatcacagccgaccagatcatctcctacctc
gccgcccacgcccacgagcagatgcacaggcaggccgccgccgacggcaagcccgtcctc
ccgcccaccgtcgtcgaccagatccgcctctggcaactcgagaacgagcgcatgaagacg
acgtctggcttcctcttccgcgactttgacgacgatgccgagtacagggatatcgcgcgg
ttcgccgacgagattggcgtgctggcgtggcggaacgatcggaagcgcatgttcttcgcg
agcaagcatgagcagatccgcgattatctcaagctgcggaagaaggcgtag
DBGET
integrated database retrieval system