KEGG   Variovorax sp. PMC12: C4F17_05890Help
Entry
C4F17_05890       CDS       T05380                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vam  Variovorax sp. PMC12
Pathway
vam03030  DNA replication
vam03410  Base excision repair
vam03420  Nucleotide excision repair
vam03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C4F17_05890
   03410 Base excision repair
    C4F17_05890
   03420 Nucleotide excision repair
    C4F17_05890
   03430 Mismatch repair
    C4F17_05890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vam03032]
    C4F17_05890
   03400 DNA repair and recombination proteins [BR:vam03400]
    C4F17_05890
Enzymes [BR:vam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C4F17_05890
    6.5.1.6  DNA ligase (ATP or NAD+)
     C4F17_05890
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     C4F17_05890
DNA replication proteins [BR:vam03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    C4F17_05890
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     C4F17_05890
DNA repair and recombination proteins [BR:vam03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     C4F17_05890
   NER (nucleotide excision repair)
    Other NER factors
     C4F17_05890
   MMR (mismatch exicision repair)
    Other MMR factors
     C4F17_05890
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M ParA
Motif
Other DBs
NCBI-ProteinID: AVQ80521
UniProt: A0A2P1V5U3
LinkDB All DBs
Position
1:1283574..1284416
Genome map
AA seq 280 aa AA seqDB search
MLNRRSLLLAAFGLVTAPAAFARAAAPSLMLADVYRPGMSLNDYWVSEKYDGVRGYWDGK
QLWTRGGERIAAPAWFTAALPAQPLDGELWAGRGRFAHAVATVRSQTPNDVAWHEMRFMV
FDLPNQPGDFTARLGALRKLLPITDAPWVVAVPQERATTHAELQSLLDKTVKMGGEGLML
HRGSSQYRGERNNDLLKVKPYEDAEARVVEHVPGKGRHAGRLGALLVETADGKRFKLGTG
LTDAERENPPAIGSWVTYRYNGTTTTGLPRFARFMRVREG
NT seq 843 nt NT seq  +upstreamnt  +downstreamnt
gtgctgaatcgacgctccctcctgcttgccgctttcggcctggttaccgcgcccgccgcg
ttcgcgcgcgcggcggcgccttcgctgatgctggccgacgtctaccgccccggcatgtcg
ctgaatgactactgggtgagcgagaagtacgacggcgtgcgcggctactgggacggcaag
caactctggactcgcggcggcgagcggatcgcggcgcccgcgtggttcacagccgcactg
cccgcgcagccgctcgacggcgaactgtgggcaggacgaggccgcttcgcgcacgccgtg
gcaacggtgcgcagccagacgcccaacgacgtcgcatggcacgagatgcgcttcatggtg
ttcgacctgcccaaccagcccggcgacttcacggcgaggctgggcgcactgcgcaagctg
ctgcccatcaccgacgcaccgtgggtcgtggccgttccgcaggagcgcgcgaccacgcat
gcagagctgcagtcgctgctcgacaagacggtgaagatgggtggcgaggggctgatgctc
caccgcggcagttcgcagtaccgtggcgagcgcaacaacgatctgctgaaggtcaagccc
tacgaagacgccgaggcccgcgtggtcgagcacgtgcccggcaaaggcaggcacgccggg
cggctgggcgcgctgctggtcgagacggccgacggcaagcgcttcaagctcggcaccggg
ttgaccgacgccgagcgtgagaatccgcccgccatcggcagctgggtgacctaccgctac
aacggcaccaccacgacgggcctgccccgctttgcccgcttcatgcgggtgcgcgaaggc
tag

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