KEGG   Variovorax sp. PMC12: C4F17_16210Help
Entry
C4F17_16210       CDS       T05380                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vam  Variovorax sp. PMC12
Pathway
vam03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C4F17_16210 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vam03400]
    C4F17_16210 (ligD)
Enzymes [BR:vam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C4F17_16210 (ligD)
DNA repair and recombination proteins [BR:vam03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C4F17_16210 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S ParE_toxin
Motif
Other DBs
NCBI-ProteinID: AVQ82371
UniProt: A0A2P1VB45
LinkDB All DBs
Position
1:complement(3505510..3508050)
Genome map
AA seq 846 aa AA seqDB search
MGTTASAARKALARYHGKRDFSRTPEPEAGGQAGKGVLSFVIQKHHASHLHYDFRLELDG
TLKSWAVPKGPCLDPSVKRMAVHVEDHPISYAGFEGTIPPKQYGAGSVIVWDRGDWLPEG
DARKSLAAGKLKFELRGEKLHGHWTLVRMHGKGDESHEPWLLIKERDAEARPLADYDVLE
AQPASVLSGRGVDEVGQPAKKAPDRAPAKASAKAVKKAVKKAVKKAVKKAVKKTALPASL
QPQLATLASSPPASREDWLYELKFDGYRLLARIDKGEVRCFTRNGHDWTAKLPALAAALA
KLPTGAAWLDGEITVEGKNGAPDFQALQNAFDSGATSAIVYWLFDAPFLDGEDLRDMPVE
ERRARLAKLVGKKPPAPLRLSEAFDAAPGDLLASSARIGFEGIVGKRKGSPYVSRRSPDW
IKLKNQRRQEFVIGGYTAPKGSRAGFGALLLGVHDEATGRLRYCGNVGTGFDAKRLADVK
ARLDKLATEDCPFSPQPCGVKAQWVKPTLVAEVSFGEWTREDRVRHAVFQGLRADKPARD
IRREQPEEGNITPMAQKITHADRVIDKHSGITKGQLAAYYDSVATLMLPHLRGRPVSLVR
APEGVGGELFFQKHLQNSEIPGVRLLDPALDPGHEPLLQIDTKTGLLGAAQMNVIELHTW
NATSRAIGKPDRMTFDLDPGEGVAWPQIQEAAILVRTLLDELGLPSFLKTSGGKGLHVVV
PLRRQYDWDMVKGFSQAVVAHLAETIPSRFVAKSGPRNRVGKVFVDYLRNGFGATTVSAW
SARSRPGLGVSVPVAWDELPTLTAADQWNVGNAAERFATGNKPWAAMERSRKGLAAAMKL
LGYSGK
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atgggcaccacggcatcggcggcgcgcaaggcactggcgcgctaccacggcaagcgcgac
ttctcgcgcacgcccgagcctgaggccggcggccaggcgggcaagggcgtgctgtccttc
gtgatccagaagcaccacgcgagccacctgcactacgacttcaggctggaactcgacggc
acgctcaagagctgggccgtgccgaaggggccgtgcctcgacccgagcgtgaagcgcatg
gcggtgcacgtcgaggaccatccgatctcctacgccggattcgagggcaccattccgccg
aagcagtacggcgcgggcagcgtcatcgtctgggaccgcggcgactggctgcccgagggc
gacgcgcgcaagtcgctcgcggccggcaagctcaagttcgagctgcgcggcgagaagctg
cacggccactggacgctggtgcgcatgcacggcaagggcgatgagtcgcacgagccctgg
ctgctcatcaaggagcgtgacgccgaggcccgcccgctcgccgactacgacgtgctcgaa
gcgcagccggcgagcgtgctgagcggacgcggcgtggacgaggtggggcagccggcgaag
aaggcaccggacagggcgcctgcgaaggcaagcgcgaaggcggtgaaaaaggcggtgaag
aaggcagtgaagaaggcagtgaagaaggcagtgaagaagacagcgcttcccgccagcctc
cagccccagctcgccacccttgcgtcgtcgccgcctgcatcgcgcgaagactggctctac
gagctcaagttcgacggttaccgcctgctcgcgcgcatcgacaagggcgaggtccgctgc
ttcacccgcaacggccacgactggaccgccaagctgcccgcgctcgccgcggcgctcgcg
aagctgcccaccggcgcggcatggctcgacggcgagatcacggtggaaggcaagaacggc
gcgcccgacttccaggcactgcagaacgctttcgacagcggcgcgacgtcggccatcgtc
tactggctgttcgacgcgccctttctcgacggcgaggacctgcgcgacatgccggtcgag
gaacgccgcgcgcggcttgcaaagctcgtcggcaagaaaccgcccgcgccgctgcgcctg
agcgaggccttcgacgcggcgccgggcgacctgctcgcgtcgtccgcgcgcatcggcttc
gagggcatcgtcggcaagcgcaagggctcgccttacgtgtcgcgccgttcgcccgactgg
atcaagctcaagaaccagcggcgccaggagttcgtgatcggcggctacaccgcgcccaag
ggctcgcgcgccggcttcggcgcgctgctgctgggcgtgcacgacgaggccaccggccgg
ctgcgctactgcggcaacgtcggcaccggcttcgacgcgaagcgccttgccgacgtcaag
gcccggctcgacaagctggcgaccgaggactgcccgttctcgccgcagccttgcggcgtc
aaggcacagtgggtcaaacccacgctggtggccgaggtctcgttcggcgagtggacgcgc
gaagaccgcgtgcggcacgccgtgttccagggcctgcgcgccgacaagcccgcgcgcgat
atccgccgcgagcagccggaggaaggaaacatcacccccatggcccagaagatcactcat
gccgaccgcgtgatcgacaagcacagcggcatcaccaagggccagctcgcggcctactac
gacagcgtggccacgctcatgctgccgcacctgcgcggacggcccgtgtcgctggtgcgc
gcgcccgagggcgtgggcggcgagctgttcttccagaaacatctgcagaacagcgagatc
cccggcgtgcgcctgctcgatcccgcgctcgaccccggccacgagccgctgctgcagatc
gacaccaagaccgggctgctgggcgcggcgcagatgaacgtgatcgagctgcacacctgg
aacgccacctcgcgcgccatcggcaagcccgaccgcatgaccttcgacctcgaccccggc
gaaggcgtcgcgtggccgcagatccaggaggcggccattctggtgcgcaccctgctggac
gaactgggcctgccttcattcctcaagaccagcggcggcaagggcctgcacgtggtggtg
ccgctgcgccggcagtacgactgggacatggtcaagggcttctcgcaggcagtggtggcg
cacctggccgagacaattccatcgcgcttcgtggccaagagcgggccgcgcaaccgggtg
ggcaaagtgttcgtcgactacctgcgcaacggcttcggcgccaccacggtgagcgcgtgg
tcggcgcgctcgcggccggggctgggcgtgtcggtgccggtggcgtgggacgagctgccc
acgctcacggccgccgaccagtggaacgtcggcaacgcggccgaacgcttcgctaccggc
aacaagccgtgggctgcgatggagcgcagccgcaagggcctggccgccgcgatgaagctg
ctgggctacagcggcaagtaa

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