Variovorax sp. PMC12: C4F17_20365
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Entry
C4F17_20365 CDS
T05380
Name
(GenBank) LysR family transcriptional regulator
KO
K04761
LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_20365
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
LysR family
C4F17_20365
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GFIT
Motif
Pfam:
LysR_substrate
HTH_1
Motif
Other DBs
NCBI-ProteinID:
AVQ83130
UniProt:
A0A2P1VD71
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Position
1:4402061..4403026
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AA seq
321 aa
AA seq
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MTLTELKYIVAVARERHFGKAAEACYVSQPTLSVAIKKLEDELEVKLFERSAGEVTVTPL
GEQIVQQAQSVLDQAASIKEIAKRGKDPLAGPLNLGVIYTIGPYLLPDLVRQVIQRTPQM
PLVLQENFTVKLLEMLRAGEIDCAIMAEPFPDTGLAMAPLYDEPFMAALPAKHKFADRES
ITSEELQSETMLLLGTGHCFRDHVLEVCPEFARFSSNAEGIRKSFEGSSLETIKHMVASG
MGVTLVPRLSVPAEALKPRVKGRKEAEQMVRYLPVRDAHDRDPPTRRVVLAWRRTFTRYE
AIAALRNAIYACELPGVKRLS
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgactctcaccgaactcaaatacatcgtcgcagtagcccgcgaacggcacttcggcaag
gcggccgaggcctgctacgtctcccagccgaccctctcggtcgccatcaagaaactggag
gacgaactcgaggtcaagctcttcgagcgcagcgccggcgaggtgaccgtcaccccgctg
ggcgagcagatcgttcagcaggcgcagagcgtgctcgaccaggcggccagcatcaaggaa
atcgccaagcgcggcaaagacccgctggccggcccgctgaacctcggcgtgatctacacc
atcgggccgtacctgctgcccgacctggtccgccaggtgatccagcgcacgccgcagatg
ccgctggtgctgcaggagaacttcaccgtcaagctgctcgagatgctgcgcgccggcgag
atcgactgcgccatcatggccgagccctttcccgacaccggcctggcgatggcgccgctg
tacgacgagcccttcatggcagccctgcccgcgaagcacaagttcgccgaccgcgaatcg
atcacgtccgaggaactgcagagcgagaccatgctgctgctgggcaccggccactgcttt
cgcgaccacgtgctcgaggtctgccccgagttcgcgcgcttctccagcaatgccgaaggc
atccgcaagagcttcgagggctcgtcgctggagaccatcaagcacatggtggcctccggc
atgggcgtgacgctggtgccgcggctgtcggtgccggccgaggcgctcaagccgagggtc
aagggccgcaaggaggccgagcagatggtgcgctacctgccggtgcgcgacgcgcacgat
cgcgatccgcccacgcgccgcgtggtgctcgcttggcggcgcaccttcacgcgctacgag
gccatcgcggccctgcgcaacgcgatctacgcgtgcgagctgccgggcgtcaagcggctg
tcctga
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