Variovorax sp. PMC12: C4F17_20690
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Entry
C4F17_20690 CDS
T05380
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00061
Fatty acid biosynthesis
vam00071
Fatty acid degradation
vam01100
Metabolic pathways
vam01212
Fatty acid metabolism
vam02024
Quorum sensing
Module
vam_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
C4F17_20690
00071 Fatty acid degradation
C4F17_20690
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_20690
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vam01004
]
C4F17_20690
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vam04147
]
C4F17_20690
Enzymes [BR:
vam01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
C4F17_20690
Lipid biosynthesis proteins [BR:
vam01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
C4F17_20690
Exosome [BR:
vam04147
]
Exosomal proteins
Exosomal proteins of breast milk
C4F17_20690
Exosomal proteins of breast cancer cells
C4F17_20690
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
DUF3502
Motif
Other DBs
NCBI-ProteinID:
AVQ83187
UniProt:
A0A2P1VDE4
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All DBs
Position
1:complement(4459736..4461694)
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AA seq
652 aa
AA seq
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MQTTAPTFPRLMLAHAEARPESPAVREKDLGIWQTWTWNAVAQEVREMACGLASLGFKAN
DNLAIVGANRPHLYMAVIAAQSLRGVPVPLYQDAVAGEMVFMLQDAGIEFVIAEDQEQVD
KLLECREIQQGKLPAIRHIIYDDPKGLRHYDQPGLLSYEQLRAVGREFDKANVGYYDRAV
ASGEATDVGVILYTSGTTGRPKGVCQTHASFIAAGRGGVETDRLGPGDNIMSYLPMAWVG
DHLFSVAQWLVGGFTLNCPESAETVMNDMREIGPSYYFGPPRTFEGLLTAVSIRMEDAAA
PKRWLYARFMALAQRVGADILNGAPVGAGDRLMYALGNLLIYGPLRNVLGMSRIRVAYTA
GAAIGPDLFRFYRSIGVNLKQFYGQTETCAYVCLQQDGKVKLQTVGTAAPGIELKIAEDG
EVLVRGVSVLKEYYKRPDATAEVLDANGYFHTGDAGVLDSEGHLRIIDRAKDVGRLVSGA
IFAPNYIENKLKFFPQIKEAVCFGNGRDEVCAAINIDYEAVGNWAERRGLAYGGYVDLAG
KPDVLALVAECIGKVNADLAAEDGMGETQIARFLVLHKELDPDDDELTRTRKVRRGFIAE
KYAVLVDALYGRKTEQYIETQVKFEDGRTGTVSATLRVVDAKTFPIIVKAAA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaacaaccgcccccaccttcccccgcctgatgctcgcgcatgccgaggcccgaccc
gagtcgccggccgtgcgcgagaaggatctcggcatctggcaaacctggacctggaacgcc
gtggcgcaggaagtgcgcgaaatggcctgcggcctggcgagcctgggcttcaaggccaac
gacaacctggccatcgtcggcgccaaccggccgcacctgtacatggcggtgatcgccgcg
cagagcctgcgcggcgtgccggtgccgctgtaccaggacgcggtggccggcgagatggtc
ttcatgctgcaggacgcgggcatcgagttcgtgatcgccgaagaccaggagcaggtcgac
aagctgctggagtgccgcgagatccagcagggcaagctgccggccatccgccacatcatc
tacgacgaccccaagggcctgcgccactacgaccagcccgggctcttgagctacgagcag
ctgcgcgcggtgggccgcgagttcgacaaggccaacgtgggctactacgaccgcgcggtc
gccagcggcgaggcgacggacgtgggcgtgatcctctacacctccggcaccaccggccgc
cccaagggcgtgtgccagacgcatgcgagcttcatcgcggcgggccgcggcggcgtggag
accgaccggctcggccccggcgacaacatcatgagctacctgccgatggcctgggtgggc
gaccacctgttctcggtggcgcagtggctggtgggcggcttcacgctcaactgccccgag
tccgccgagacggtgatgaacgacatgcgcgagatcggcccgagctattacttcggcccg
ccgcgcaccttcgaaggcctgctcaccgccgtgtcgatccgcatggaagacgcggccgcg
cccaagcgctggctgtatgccaggttcatggcgctcgcacagcgcgtgggcgcggacatt
ctcaacggcgcgccggtgggcgccggtgaccggctgatgtacgccctgggcaacctgctg
atctacggcccgctgcgcaacgtgctgggcatgagccgcatccgcgtggcctacacagcg
ggcgcggccatcgggccggacctgttccgcttctaccgctccatcggcgtgaacctgaag
cagttctacggccagaccgagacctgcgcctacgtgtgcctgcagcaggacggcaaggtc
aagctgcagaccgtgggcaccgccgcgccgggcatcgagctgaagatcgcggaagacggc
gaggtgctggtgcgcggcgtgtcggtgctcaaggagtactacaagcgccccgacgccacc
gccgaggtgcttgacgccaacggctacttccacaccggcgacgcgggcgtgctcgacagc
gaaggccacctgcgcatcatcgaccgcgccaaggacgtgggccggctcgtgagcggcgcg
atcttcgcgcccaactacatcgagaacaagcttaagttcttcccgcagatcaaggaggcc
gtgtgcttcggcaacggccgcgacgaagtgtgcgcggccatcaacatcgactacgaggcc
gtgggcaactgggccgagcggcgcgggctggcctacggcggctacgtcgacctggccggc
aagcccgacgtgctggcgctggtggccgaatgcatcggcaaggtcaacgccgacctcgcg
gccgaggacggcatgggcgagacgcagatcgcgcgcttcctggtgctgcacaaggagctc
gaccccgacgacgacgaactgacccgcacgcgcaaggtgcgccgcggcttcattgccgag
aaatacgcggtgctggtcgatgcgctctatggccgcaagaccgagcagtacatcgagacc
caggtcaagttcgaggacgggcgcacgggcacggtgagcgccacgctgagggtcgtcgat
gcgaagactttccccatcatcgtgaaggcggcggcatga
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