KEGG   Vibrio anguillarum 775: VAA_1806Help
Entry
VAA_1806          CDS       T01536                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
van  Vibrio anguillarum 775
Pathway
van03030  DNA replication
van03410  Base excision repair
van03420  Nucleotide excision repair
van03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:van00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VAA_1806
   03410 Base excision repair
    VAA_1806
   03420 Nucleotide excision repair
    VAA_1806
   03430 Mismatch repair
    VAA_1806
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:van03032]
    VAA_1806
   03400 DNA repair and recombination proteins [BR:van03400]
    VAA_1806
Enzymes [BR:van01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VAA_1806
    6.5.1.6  DNA ligase (ATP or NAD+)
     VAA_1806
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VAA_1806
DNA replication proteins [BR:van03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VAA_1806
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VAA_1806
DNA repair and recombination proteins [BR:van03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VAA_1806
   NER (nucleotide excision repair)
    Other NER factors
     VAA_1806
   MMR (mismatch exicision repair)
    Other MMR factors
     VAA_1806
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AEH33208
UniProt: F7YJ73
LinkDB All DBs
Position
I:1747831..1748697
Genome map
AA seq 288 aa AA seqDB search
MIEPDGMQLKLSLLSIALLNTIPVTATENFQMFIPVTAANSYQHGIDVAEYWKSEKLDGI
RAIWNGQYLHTRNGNKINAPAWFTAPLPNKALEGELWAGRGQFHHVQQTVLDTIPTDEAW
QSIRFMLFDMPEAIGDYQKRYRNLIHLSSLMNAPHITYIEHSLIHSEKELLGYLDNVSDG
QGEGVMLRKINAHYQAGRSNDLLKLKKHQDAEATVIGYKLGSGKYQGMMGSVLVRLENGV
EFYIGSGFSDEIRNNPPKIGSIITFRFNDLTAEGKPRFARFMRERPAI
NT seq 867 nt NT seq  +upstreamnt  +downstreamnt
ttgatcgagcctgacggcatgcaactgaaactatcgctactctccatcgctttattgaac
acaattcctgtcactgcaacggaaaactttcagatgtttattccggtcacagcagccaac
agttaccaacatggaattgatgttgctgagtactggaaaagtgaaaaactggatggaatt
cgcgccatctggaatggacaatatcttcatacgcgtaatggtaataagataaatgcgcct
gcttggtttactgcaccattacctaataaagcattagaaggagagctttgggctggacga
ggtcaatttcatcacgttcaacaaacggtattggataccataccaaccgatgaagcgtgg
caaagcatccgctttatgctgtttgatatgcccgaagcgatcggtgactaccaaaagcga
taccgcaatctcatccacttatcctcactcatgaatgctccgcacattacctatattgaa
cattcactaattcactcagaaaaagagctgcttgggtatttagacaacgtaagtgatggg
cagggtgaaggggtgatgctgcgaaaaattaatgcccattaccaagccggccgcagtaac
gatttacttaagcttaaaaaacaccaagatgctgaagctacggtcattggttataaactg
ggttctggcaaatatcaaggtatgatgggatcagtgctagtgcgcttagaaaacggtgtt
gagttctatatcggcagcggtttttctgatgagatcagaaataatccgccaaagatcgga
tccattattacttttcgttttaatgatctcactgcagaagggaaaccaagatttgcacgt
tttatgagagaaaggccagcaatataa

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