Variovorax paradoxus S110: Vapar_0003
Help
Entry
Vapar_0003 CDS
T00916
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vap03032
]
Vapar_0003
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_0003
Enzymes [BR:
vap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Vapar_0003
DNA replication proteins [BR:
vap03032
]
Prokaryotic type
DNA Topoisomerases
Vapar_0003
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Vapar_0003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ACS16666
UniProt:
C5CV73
LinkDB
All DBs
Position
1:2747..5371
Genome browser
AA seq
874 aa
AA seq
DB search
MSAEENKPEVPHTEPVYTPEIESAVPIEITPADTSYGEGSITILEGLEAVRKRPGMYIGD
TSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKHE
PKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVMLRLVVRREGKIHELEF
SRGFVQNRLIETVNGVEVSPMRIIGETDKRGTEVHFLPDTEIFKENADFHYEILSKRLRE
LSFLNNGVRIRLKDERSGKEDDFSGAGGVKGFVDFINKGKTVLHPNVFYAMGEKPADTYG
GIPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFA
KKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQE
RPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLV
EGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTMITALGTGIGRAGA
TSAGGGADDFNVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPP
LYKVKVGKEEQYLKDGPALDAFLLKVALKDASIETGGPNSTTLSGDTLAELARKHQLAEA
VIARLRNFMDAEALRAIADGVALDLDTTPAAEASAVALQAKLRELNTTGVPAEVSSEFDA
RTDKPLLRISRRHHGNIKSSVLTQDFVHGADYAALAEAANTFRNLLSSEGATVRRGEGER
AKEEKVADFRIAMKWLIGQAENATSRQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDA
IEADRVFTMLMGDEVEPRREFIEQNALRAANIDV
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagaagagaacaagcccgaagtaccccacaccgagccggtctacacgcccgag
atcgagagtgcggtaccgatcgagatcacgcccgccgacaccagctacggcgaaggctcg
atcacgatcctcgaagggctcgaggcggtgcgcaagcgccccggcatgtacatcggcgac
acctccgacggcacgggcctgcaccacctggtgttcgaggtggtcgacaactccatcgac
gaggcgctggccgggcattgcgacgacatcgtcgtgaccatccacaccgacaactcgatc
tccgtcaccgacaacggccgcggcattcccacgggcgtgaagatggacgacaagcacgag
cccaagcgctcggcctccgaaatcgcgctcaccgagctgcacgcgggcggcaagttcaac
cagaacagctacaaggtgtcgggcggcctgcacggcgtgggcgtgagctgcgtgaacgcg
ctgagcgtgatgctgcgcctggtggtgcggcgcgaaggcaagatccacgagctcgaattc
agccgcggcttcgtgcagaaccgcctgatcgagaccgtgaacggcgtcgaggtgtcgccg
atgcggatcatcggggagaccgacaagcgcggcaccgaagtccacttcctgcccgacacc
gagatcttcaaggagaacgccgatttccactatgaaatcctctccaagcggttgcgcgag
ctgagctttttgaacaacggcgtgcgcatccgcctgaaggacgagcgcagcggcaaggaa
gacgacttctcgggcgccggcggcgtcaagggttttgtcgatttcatcaacaagggcaag
accgtcctgcaccccaacgtgttctacgcaatgggcgagaagccggccgacacctacggc
ggcatcccgggcacgcacatcggcgtcgaagtggcgatgcagtggaacagcggctacaac
gagcaggtgctgtgcttcaccaacaacatcccgcagcgtgacggcggcacccacctcacg
ggcctgcgcgccgcgatgacacgcgtcatcaacaagtacatcgaagaaaacgagttcgcc
aagaaggcgaaggtcgaagtcaccggtgacgacatgcgcgaaggcctgtgctgcgtgctg
agcgtgaaggtgcccgagcccaagttctcgagccagaccaaggacaagctggtgtccagc
gaagtgcgcgcgccggtggaagacatcgtcggccgcctcctgaccgactacctgcaggaa
cgcccgaacgacgccaagatcatctgcggcaagatcgtcgaggccgcccgcgcccgcgag
gctgcgcgcaaggcccgcgagatgacgcgccgcaagggcgtgctcgacggcatgggcctg
cccggcaagctggccgactgccaggaaaaggatcccgcgctgtgcgaggtctacctggtg
gagggcgactccgccggcggctccgccaagcagggccgcgaccggaagttccaggccatc
ctgccactgcgtggcaagatcctgaacgtggaaaaggcgcgctacgagaagctgctcacc
agcaacgaaatcctcaccatgatcacggcgctgggcaccggcatcggccgtgccggcgcc
accagcgcgggcggcggggcggacgacttcaacgtcgccaagctgcgctaccaccgcatc
atcatcatgaccgacgccgacgtcgacggcgcccacatccgcacgctgctgctcaccttc
ttctaccggcagatgccggagctggtcgagcgcggccacatctacatcgcgcagccgccg
ctgtacaaggtgaaggtcggcaaggaagagcagtacctgaaggacggccccgcgctggac
gccttcctgctcaaggtggcgctgaaggacgcgagcatcgagaccggcggccccaactcg
accaccctctccggcgacacgctggccgagctcgcgcgcaagcaccagctggccgaagcc
gtgatcgcgcggctgcgcaacttcatggatgccgaggccctgcgcgccattgccgacggc
gtggcgctcgacctcgacaccacgcccgcggccgaagcctcggccgtggcgctgcaggcc
aagctgcgcgagctcaacaccaccggcgtgccggccgaggtaagcagcgaattcgacgcc
cgcaccgacaagccgctgctgcgcatcagccgccgccaccacggcaacatcaagagcagc
gtgctcacgcaggacttcgtgcacggcgccgactacgccgcgctcgccgaagccgccaac
accttccgcaacctcctgagcagcgaaggcgccaccgtccgccgcggcgaaggcgaacgc
gccaaggaagaaaaggtggccgacttccgcatcgccatgaagtggctcatcggccaggcc
gagaacgccacctcgcgacagcgctacaagggcctgggcgaaatgaaccccgcacagctg
tgggaaaccaccatggacccgaccgtgcgccgcctgctgcgcgtgcagatcgacgacgcg
atcgaagccgaccgcgtgttcacgatgctgatgggcgacgaggtcgaaccgcgccgcgaa
ttcatcgagcagaacgcgctgcgggcggcgaatatcgacgtctga
DBGET
integrated database retrieval system
