KEGG   Variovorax paradoxus S110: Vapar_2739Help
Entry
Vapar_2739        CDS       T00916                                 

Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vap  Variovorax paradoxus S110
Pathway
vap03030  DNA replication
vap03410  Base excision repair
vap03420  Nucleotide excision repair
vap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Vapar_2739
   03410 Base excision repair
    Vapar_2739
   03420 Nucleotide excision repair
    Vapar_2739
   03430 Mismatch repair
    Vapar_2739
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vap03032]
    Vapar_2739
   03400 DNA repair and recombination proteins [BR:vap03400]
    Vapar_2739
Enzymes [BR:vap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Vapar_2739
    6.5.1.6  DNA ligase (ATP or NAD+)
     Vapar_2739
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Vapar_2739
DNA replication proteins [BR:vap03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Vapar_2739
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Vapar_2739
DNA repair and recombination proteins [BR:vap03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Vapar_2739
   NER (nucleotide excision repair)
    Other NER factors
     Vapar_2739
   MMR (mismatch exicision repair)
    Other MMR factors
     Vapar_2739
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M ParA
Motif
Other DBs
NCBI-ProteinID: ACS19361
UniProt: C5CLV4
LinkDB All DBs
Position
1:complement(2886566..2887417)
Genome map
AA seq 283 aa AA seqDB search
MLNRRSLLLAGLGALAARGAAAREAAPALMLAEVYRPGMSLDDYWVSEKFDGVRGYWDGK
QLWTRGGEPVVAPAWFIAPLPKQPLDGELWAGRGQFAHAVSTVRSQTPNDTAWHSMRFMV
FDLPAQGGDFTARLAVLRKLLPITDAPWVVPVPQERATTHADLQALLAKTVKMGGEGLML
HRGGSLYRAERNSDLLKVKTHDDAEARVVGHMPGKGRHSGRLGALLVETPEGKRFKLGSG
LTDAERENPPAIGSWVTYRYNGTNPGGLPRFARFMRVRSDRPS
NT seq 852 nt NT seq  +upstreamnt  +downstreamnt
ttgctgaacagacgttccctcctgctcgccggcctcggcgcgctggcggcccgcggggcc
gccgcgcgcgaggccgcgccggccttgatgctggccgaggtctaccgccccggcatgtcg
ctggacgactactgggtcagcgaaaaattcgacggcgtgcgcggctactgggacggcaag
cagctgtggacgcgcggcggcgaaccggtggtggcgcccgcctggttcatcgcgccgttg
cccaagcagccgctcgacggcgagctgtgggccggcaggggccagttcgcgcatgcggtt
tccaccgtgcgcagccagacgcccaacgacaccgcctggcacagcatgcgcttcatggtg
ttcgacctcccggcccagggcggcgatttcacggcgcggctggccgtcttgcgcaagctg
ctgccgatcaccgatgcgccgtgggtggtgcccgtgccgcaggagcgcgcaaccacccat
gcggatctgcaggccctgctcgccaagaccgtgaagatgggcggcgagggcctgatgctg
caccggggcggatcgctctaccgcgccgagcgcaacagcgacctgctcaaggtcaagacc
cacgacgacgccgaggcccgcgtggtcggccacatgcccggcaagggccggcacagcggc
cggttgggcgcgctgctggtcgaaactcccgagggcaagcgcttcaagctcggcagcggc
ctgaccgatgccgagcgcgagaacccgcccgccatcggcagctgggtgacctaccgctac
aacggcaccaacccgggcggcttgcccaggttcgcgcgcttcatgcgggtgcgcagcgac
cggccctcctga

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