Variovorax paradoxus S110: Vapar_5277
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Entry
Vapar_5277 CDS
T00916
Name
(GenBank) protein of unknown function DUF558
KO
K09761
16S rRNA (uracil1498-N3)-methyltransferase [EC:
2.1.1.193
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vap03009
]
Vapar_5277
Enzymes [BR:
vap01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.193 16S rRNA (uracil1498-N3)-methyltransferase
Vapar_5277
Ribosome biogenesis [BR:
vap03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
Vapar_5277
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltrans_RNA
PUA_4
Ribosomal_L32p
Motif
Other DBs
NCBI-ProteinID:
ACS21879
UniProt:
C5CS99
LinkDB
All DBs
Position
1:5602285..5603019
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AA seq
244 aa
AA seq
DB search
MPRFHCPVPLTAGASLELPPGPARHVQVLRMQPGDALTLFDGSGGEYAATVERMGRSDVS
VAIGAHAPAEREAVRSVHLAVGMPANERMDWLVEKATELGVASIQPLATAHGVLRLSGER
AEKKRAHWEAIAIAACEQCGRNRVPRIHPVRPFSGPSAWIGAHAGEAPLRLVLSLAEGMR
RLADATASAPADRSVLVLSGPEGGLSSAEEQKALACGFAPVTLGPRVLRAETAALAALVL
LAGP
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgccccgtttccactgtccggtgcccttgaccgcgggtgcctcgctcgaactgcctccc
ggccccgcgcgccacgttcaggtgctgcgcatgcagcccggcgatgcgctcaccttgttc
gacggctcgggcggcgaatatgcggcaaccgtggagcgcatggggcgcagcgatgtgtcg
gtggcgatcggcgcccatgcgccggccgagcgcgaggccgtgcgctcggtgcacctggcc
gtcggcatgccggccaacgagcgcatggactggctggtcgaaaaagccaccgaactgggc
gtcgcgagcatccagccactggccacggcccatggcgtgctgcgcctttcgggcgagcgc
gccgagaagaagagggcgcattgggaagcgattgcgattgccgcctgcgagcaatgcggc
cgcaaccgcgtgccgcggatccatccggtgcggccgttctcgggcccctcggcctggatc
ggcgcgcatgcgggcgaggccccgctgcgccttgtcctgagcctggccgaaggcatgcgg
cgcctggccgatgccaccgcctcggcgccggccgatcgcagcgtgctggtgctgagcggc
cccgagggcggcctgagcagcgccgaggaacagaaagcgctggcctgcggctttgcgccg
gtcacgctcgggccgcgcgtgctgcgcgccgaaaccgcggcgctggccgcgctggtattg
ctcgcgggcccctga
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integrated database retrieval system
