Vibrio astriarenae: GT360_08175
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Entry
GT360_08175 CDS
T06574
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vas
Vibrio astriarenae
Pathway
vas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT360_08175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vas03019
]
GT360_08175
Enzymes [BR:
vas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GT360_08175
Messenger RNA biogenesis [BR:
vas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GT360_08175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Flavi_DEAD
AAA_22
DUF4456
Motif
Other DBs
NCBI-ProteinID:
QIA63495
UniProt:
A0A7Z2T3B9
LinkDB
All DBs
Position
1:1720233..1721429
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AA seq
398 aa
AA seq
DB search
MPFSRLGLSQPITDAINELGYTKPTTIQNKAIPVILNGEDLIAAAQTGTGKTASFVLPIL
EKLKDSETQRKKRIRALILAPTRELAIQVESKVQEYGKHLNLTSLAMYGGVDEQSQKQAL
IEGVDILVATPGRLLDMYGKRAVYFEEVEILVLDEADRMLDMGFIDDINKILDRLPVDIQ
NLLFSATLSNKVRDLAKTAVHDPYEISIAANAASKKNIEQWLITVDKDMKSSLLSHLIKE
NDWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSQLLADFKAGKIKYMIAT
GVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIES
RLGHLIERRVIEGFEPRKPVPISILNYVPKHKRVNKED
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccagactaggcttaagccaacccattactgatgccattaatgaacttggt
tacacaaagccaaccacaatccaaaacaaggccatccctgtcatcttaaacggtgaagat
ttgattgctgctgcgcaaaccggtaccggtaaaactgcgagctttgttttacctattttg
gaaaaactcaaagacagtgaaactcagcgtaaaaagcgtattcgtgctcttatcttggca
ccaacacgcgagctcgcgattcaggttgaatctaaggttcaagagtacggcaagcaccta
aaccttacctcacttgcgatgtacggtggtgttgatgagcaatcacaaaagcaagcgctg
attgaaggtgtggatattctggtggcgacgccgggacgactgcttgatatgtacggcaaa
cgtgctgtctactttgaagaagtggaaattttggttcttgatgaagctgaccgcatgctg
gatatgggctttatcgacgacatcaataagattcttgaccgcttgcctgtcgatattcaa
aacctgctgttctctgccactctatcgaacaaggtacgtgatctggcaaagacagcggtt
catgacccatacgagatttccattgctgcgaatgctgcgtctaagaaaaatatcgaacag
tggttaatcacggttgataaagacatgaaatcttcactattgagccacctaatcaaagaa
aacgactgggaccaagcgctcatctttatcgagacgaaacatggtgctgccaagctagcg
agtcaactagaaaagcgcggcattgaagcagaagccttccacagcggtcgtagccaagcg
attcgctctcaactgctagccgacttcaaagcaggcaaaatcaaatacatgatcgcaacg
ggtgtcggtgctcgtggtatcgatatcgagggactcactcgcgtgatcaactatgatttg
ccattccctgccgacgaatacgtacaccgcattggtcgtacaggtcgtgctgacgcgcaa
ggtgaagcgatctcctttgtgtcaaaagacaacttcaaaaacttgtgcatgattgagagc
cgtttaggtcacctgatcgagcgacgcgtcatcgaaggctttgagccgcgtaaacctgtt
cctatctctattcttaactatgtgcctaaacacaaacgtgtgaacaaggaagactga
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