KEGG   Vibrio anguillarum NB10: VANGNB10_cI1310cHelp
Entry
VANGNB10_cI1310c  CDS       T03657                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vau  Vibrio anguillarum NB10
Pathway
vau03030  DNA replication
vau03410  Base excision repair
vau03420  Nucleotide excision repair
vau03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VANGNB10_cI1310c
   03410 Base excision repair
    VANGNB10_cI1310c
   03420 Nucleotide excision repair
    VANGNB10_cI1310c
   03430 Mismatch repair
    VANGNB10_cI1310c
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vau03032]
    VANGNB10_cI1310c
   03400 DNA repair and recombination proteins [BR:vau03400]
    VANGNB10_cI1310c
Enzymes [BR:vau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VANGNB10_cI1310c
    6.5.1.6  DNA ligase (ATP or NAD+)
     VANGNB10_cI1310c
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VANGNB10_cI1310c
DNA replication proteins [BR:vau03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VANGNB10_cI1310c
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VANGNB10_cI1310c
DNA repair and recombination proteins [BR:vau03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VANGNB10_cI1310c
   NER (nucleotide excision repair)
    Other NER factors
     VANGNB10_cI1310c
   MMR (mismatch exicision repair)
    Other MMR factors
     VANGNB10_cI1310c
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: CDQ50224
LinkDB All DBs
Position
1:complement(1547164..1548012)
Genome map
AA seq 282 aa AA seqDB search
MQLKLSLLSIALLNTIPVTATENFQMFIPVTAANSYQHGIDVAEYWKSEKLDGIRAIWNG
QYLHTRNGNKINAPAWFTAPLPNKALEGELWAGRGQFHHVQQTVLDTIPTDEAWQSIRFM
LFDMPEAIGDYQKRYRNLIHLSSLMNAPHITYIEHSLIHSEKELLGYLDNVSDGQGEGVM
LRKINAHYQAGRSNDLLKLKKHQDAEATVIGYKLGSGKYQGMMGSVLVRLENGVEFYIGS
GFSDEIRNNPPKIGSIITFRFNDLTAEGKPRFARFMRERPAI
NT seq 849 nt NT seq  +upstreamnt  +downstreamnt
atgcaactgaaactatcgctactctccatcgctttattgaacacaattcctgtcactgca
acggaaaactttcagatgtttattccggtcacagcagccaacagttaccaacatggaatt
gatgttgctgagtactggaaaagtgaaaaactggatggaattcgcgccatctggaatgga
caatatcttcatacgcgtaatggtaataagataaatgcgcctgcttggtttactgcacca
ttacctaataaagcattagaaggagagctttgggctggacgaggtcaatttcatcacgtt
caacaaacggtattggataccataccaaccgatgaagcgtggcaaagcatccgctttatg
ctgtttgatatgcccgaagcgatcggtgactaccaaaagcgataccgcaatctcatccac
ttatcctcactcatgaatgctccgcacattacctatattgaacattcactaattcactca
gaaaaagagctgcttgggtatttagacaacgtaagtgatgggcagggtgaaggggtgatg
ctgcgaaaaattaatgcccattaccaagccggccgcagtaacgatttacttaagcttaaa
aaacaccaagatgctgaagctacggtcattggttataaactgggttctggcaaatatcaa
ggtatgatgggatcagtgctagtgcgcttagaaaacggtgttgagttctatatcggcagc
ggtttttctgatgagatcagaaataatccgccaaagatcggatccattattacttttcgt
tttaatgatctcactgcagaagggaaaccaagatttgcacgttttatgagagaaaggcca
gcaatataa

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