Variovorax boronicumulans: CKY39_06525
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Entry
CKY39_06525 CDS
T05068
Name
(GenBank) RNA polymerase subunit sigma
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
vbo
Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbo03021
]
CKY39_06525
Transcription machinery [BR:
vbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKY39_06525
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_30
Motif
Other DBs
NCBI-ProteinID:
ATA52902
UniProt:
A0A250DF66
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Position
complement(1459478..1460173)
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AA seq
231 aa
AA seq
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MPPTALPLTADADANASDADLAARAAQGDTQAFAHIMRRHNQLLFRTARSILHSDADTED
TLQDAYLRAWRAIGGFRDEAKLSTWLVRIVINEALGRLRRRGAQVIPLDGGPTAGDDDDA
PDTQLADDPDRQPERLAMREDLRRLMERRIDRLPDAYRTVFVLRAVQELSVGETAEALQL
PEATVRLRFFRARSLLRDSLSRDIDLATGDAFAFDGARCDRIVARVLATLP
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccaccgccctgcccctgactgccgatgccgacgcgaacgcgtccgacgccgac
ctggccgcacgcgccgcgcagggcgacacgcaggccttcgcgcacatcatgcggcgccac
aaccagctgctgtttcgcaccgcgcgcagcatcctgcacagcgacgccgacaccgaagac
acgctgcaggacgcctaccttcgggcctggcgcgccatcggcggcttccgtgacgaagca
aagctctcgacctggctggtgcgcatcgtcatcaacgaggcgctgggccgcctgcgccgc
cgcggcgcgcaggtgattccgctcgacggcggcccgactgcaggggacgacgacgacgcc
cccgacacgcagctcgccgacgaccccgaccgccaaccggagcgcctcgccatgcgggaa
gaccttcgccgactcatggagcgccgcatcgaccggctgcccgacgcctaccgcaccgtg
ttcgtgctgcgcgcggtgcaggaactcagcgtcggcgaaaccgccgaggcgctgcagctg
cccgaggccacggtgcggctgcgcttcttccgcgcccgcagcctgctgcgcgacagcctg
tcgcgcgacatcgacctggcgacgggcgacgccttcgcgttcgacggcgcgcgctgcgac
cgcatcgtggcgcgtgtgctggcgacgctgccctga
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