KEGG   Variovorax boronicumulans: CKY39_14585Help
Entry
CKY39_14585       CDS       T05068                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vbo  Variovorax boronicumulans
Pathway
vbo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CKY39_14585 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vbo03400]
    CKY39_14585 (ligD)
Enzymes [BR:vbo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CKY39_14585 (ligD)
DNA repair and recombination proteins [BR:vbo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CKY39_14585 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ATA54314
UniProt: A0A250DJ77
LinkDB All DBs
Position
complement(3172778..3175303)
Genome map
AA seq 841 aa AA seqDB search
MARSDTPLATYQAKRDFAVTDEPAEGGKARPHAPAFVIQKHAARRLHYDFRLELDGVLVS
WAVPKGPSLDPAHKRMAVHVEDHPLSYAGFEGTIPEGHYGAGDVIVWDHGTWEPVGDPRK
GLAAGKLAFRLHGQKLEGLWELVRIAKGGERQEPWLLFKKRDAFARSHAEYDVVSALPDS
VAGARKTAKAKAQALPATGAVKARLPARLSPQLATLATGVPEGAPGDWIFEIKFDGYRLM
ARIGNGKARLLTRGGHDWSAKLPKLVAELERLGIGNAWLDGEIVVPDQNGTPDFNALQNA
LDRERADPIVMFLFDVPFFEGFDLRHTPLAERRRLLRQLMDAHATRRLRFSSDFEADVDS
ILQSACRMNLEGVIAKRADAPYVSRRSDTWLKLKCIRRQEFVVCGYTLRTDSPTRIGSLM
LGVHAKNGELVSVGGVGTGWNDREARDIRRQLAALDTDHAPFTGGEAKPGRRRPGGTRHW
VKPTLVAEVRFAAWTPDGQVRHASFVAMRDDKPASEIVHEEPRDIALVSNEKGAKAMKTP
SKKSASTVGGVAVSHGERVIDAASGRTKLDLVRYYESVADDMLPHLKGRPCALVRGPQGV
GGEIFFQKHAEKVHIAGVKQLDPALWPGHPSMLEVGTREALLNAAQFNVIEFHTSNATST
HFDRPNRMIFDLDPGEGTPWPHVQEAALLMRTLLTELGLASWLKTSGGKGLHVVVPLRMH
YDNDTVKAFSRAIVQHMAHVIPSKFVAKSGPSNRVGKLFADYLRNGVGATTVAAYSARAR
PGMGVSMPVRWDDLAGLKSGAHWTIATAREHLSFQSEDPWAAYWTTRQPLGEAMKRLGFK
R
NT seq 2526 nt NT seq  +upstreamnt  +downstreamnt
atggcccgttccgacacgcccctcgcaacctaccaggcgaagcgcgacttcgccgtcacc
gacgaacccgccgaaggcggcaaggcccggccgcacgcgcccgccttcgtgatccagaag
cacgcggcgcggcggctgcactacgacttccggctcgaactcgacggcgtgctggtgtcg
tgggccgtacccaaggggccgagcctcgaccccgcgcacaagcgcatggccgtgcatgtg
gaagaccacccgctgtcgtacgccggcttcgagggcacgattcccgagggccactacggc
gcgggcgacgtcatcgtgtgggaccacggcacctgggaacccgtgggcgatccgcgcaag
ggcctggccgcgggcaagctcgcgttccggctgcacggccagaagctcgaagggctgtgg
gaactcgtcaggatcgccaagggcggcgagcggcaggagccctggctgctgttcaagaag
cgcgatgccttcgcgcgctcgcatgccgagtacgacgtggtgtccgcgctgcccgacagc
gtggccggagcgcgcaagactgccaaggcaaaggcccaagccttgcccgcaacgggcgcg
gtgaaggcacgcctgcccgccagactttcaccgcagctcgcgacactcgccaccggcgtg
cccgaaggcgctcccggcgactggatcttcgagatcaagttcgacggctaccgcctcatg
gcgcgcatcggcaacggcaaggcacgcctgctcacgcgcggcggccacgactggagcgcg
aagctgccgaagctggtggccgagctggagcgcctgggcatcggcaacgcctggctcgac
ggcgagatcgtcgtgcccgaccagaacggcacgcccgacttcaacgcgctgcagaacgca
ctcgaccgcgaacgcgccgatcccatcgtgatgttcctgttcgacgtgcccttcttcgag
ggcttcgacctgcgccacacgccgctcgccgaacgccgccgcctgctcaggcagctgatg
gatgcgcacgccacgcgccgcctgcgcttcagcagcgacttcgaggccgatgtcgactcg
atcctgcaatcggcctgccgcatgaacctcgagggcgtgatcgccaagcgcgccgacgcg
ccgtatgtctcgcgccgcagcgacacctggctcaagctcaagtgcatccggcgccaggag
ttcgtggtgtgcggctacacgctgcgcaccgacagcccgacgcgcatcggcagcctgatg
ctgggcgtgcacgcgaagaacggtgagctggtgtcggtcggcggcgtcggcaccggctgg
aacgaccgcgaggcgcgcgacatccgccgccagctcgccgcgctcgacaccgaccacgcg
ccgttcaccggcggcgaggccaagcccggccgccgccggccgggcggcacgcggcactgg
gtgaagccgacgctcgtggccgaggtgcgcttcgccgcatggacgccggacgggcaggtc
cgccacgcgtccttcgtggcgatgcgcgacgacaagccggcgtcggagatcgtgcatgaa
gagccccgcgacatcgcacttgtctccaatgaaaagggcgcgaaggccatgaagacaccg
tcgaagaaatccgcctccaccgtcggcggcgtcgccgtgagccacggcgagcgcgtgatc
gatgcggcctcgggccgcaccaagctcgacctcgtgcgctactacgaatcggtggccgac
gacatgctgccgcacctgaagggccgcccctgcgcgctggtgcgtgggccgcagggcgtg
ggcggcgagatcttcttccagaagcatgccgagaaggtccacatcgccggcgtgaagcag
ctcgacccggccctgtggcccggtcatccgtcgatgctcgaggtcggcacgcgcgaagcc
ttgctgaacgcggcgcagttcaacgtgatcgagttccacacctcgaacgcgacctcgacg
cacttcgaccggcccaaccgcatgatcttcgacctcgacccgggcgaaggcacgccgtgg
ccgcatgtgcaggaagccgcgctgctgatgcgaacgctgctcaccgagctgggactggcg
tcatggctcaagaccagcggcggcaagggcctgcacgtggtcgtgccgctgcgcatgcac
tacgacaacgacacggtgaaggccttctcgcgcgccatcgtgcagcacatggcccacgtg
atcccgtcgaagttcgtggccaagagcgggccctcgaaccgcgtcggcaagctctttgcc
gactacctgcgcaacggcgtgggcgcgaccacggtggcggcctactcggcgcgcgcgcgg
ccgggcatgggcgtgtcgatgccggtgcgctgggacgacctcgccggtctcaagagcggc
gcgcactggaccatcgccaccgcgcgcgaacacctgtcgttccagtccgaagacccctgg
gccgcctactggaccacgcgccagccgctgggcgaggcgatgaagcggctcggcttcaag
cgatag

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