KEGG   Variovorax boronicumulans: CKY39_20180
Entry
CKY39_20180       CDS       T05068                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
vbo  Variovorax boronicumulans
Pathway
vbo00010  Glycolysis / Gluconeogenesis
vbo00020  Citrate cycle (TCA cycle)
vbo00260  Glycine, serine and threonine metabolism
vbo00280  Valine, leucine and isoleucine degradation
vbo00310  Lysine degradation
vbo00380  Tryptophan metabolism
vbo00620  Pyruvate metabolism
vbo00630  Glyoxylate and dicarboxylate metabolism
vbo00640  Propanoate metabolism
vbo00785  Lipoic acid metabolism
vbo01100  Metabolic pathways
vbo01110  Biosynthesis of secondary metabolites
vbo01120  Microbial metabolism in diverse environments
vbo01200  Carbon metabolism
vbo01210  2-Oxocarboxylic acid metabolism
vbo01240  Biosynthesis of cofactors
Module
vbo_M00009  Citrate cycle (TCA cycle, Krebs cycle)
vbo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
vbo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
vbo_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    CKY39_20180 (lpdA)
   00020 Citrate cycle (TCA cycle)
    CKY39_20180 (lpdA)
   00620 Pyruvate metabolism
    CKY39_20180 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    CKY39_20180 (lpdA)
   00640 Propanoate metabolism
    CKY39_20180 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    CKY39_20180 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    CKY39_20180 (lpdA)
   00310 Lysine degradation
    CKY39_20180 (lpdA)
   00380 Tryptophan metabolism
    CKY39_20180 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    CKY39_20180 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:vbo04147]
    CKY39_20180 (lpdA)
Enzymes [BR:vbo01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     CKY39_20180 (lpdA)
Exosome [BR:vbo04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   CKY39_20180 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Biotin_lipoyl Pyr_redox FAD_oxidored GIDA Thi4 AlaDh_PNT_C FAD_binding_2 Pyr_redox_3 NAD_binding_8 HI0933_like Biotin_lipoyl_2 FAD_binding_3 DAO DEC-1_N GCV_H Lycopene_cycl
Other DBs
NCBI-ProteinID: ATA55275
UniProt: A0A250DLN6
LinkDB
Position
complement(4338687..4340519)
AA seq 610 aa
MSEQHIKVPDIGDFDEVAVIEVLVNVGDTVKAEQSLITVESDKASMEIPSSAAGVVKSLA
VKVGDKVKEGSVVLTLEVDGAAAPAPAAAAPAPAAAAAAPAPKAAAPAPAAAASVVVSSY
GGKVDVECDVVVLGAGPGGYSAAFRAADLGLKVVLIERYATLGGVCLNVGCIPSKALLHV
ASVMDEVKHFADLGVSFAAPTVDRAKLLGHKNKVVGKLTGGLTAMAKMRKVTVLRGVGNF
IDPYHLEVEETSGTSWDTTGKKQTVKFRNAIIAAGSQSVSLPFMPKDPRVVDSTGALEMG
TDPKRMLVLGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRDLVKVWQKMNAPRFDN
IMLKTKTVGAEATKEGIKVTFEGENAPKEPQVYDLVLQAVGRSPNGKKIGAEKAGITVSD
RGFIPVDIQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEVIAGEQKGDKELSSAAFN
ARVIPSVAYTDPEVAWVGLTEDQAKAEGIKVKKGHFPWTASGRAIANGRDEGFTKLLFDA
ETHRILGGGIVGTHAGDMIGEIALAIEMGADEIDIGKTIHPHPTLGESIGMAAEVAHGTC
TDLPPAKKAA
NT seq 1833 nt   +upstreamnt  +downstreamnt
atgagcgaacaacacatcaaggtgccggacatcggcgacttcgacgaagtcgcggtgatc
gaggtgctggtcaacgtcggcgacacggtcaaggccgagcagtcgctcatcacggtcgaa
tcggacaaggcttcgatggaaattccctcgtcggccgccggcgtggtgaagtcgctggcc
gtgaaggtgggcgacaaggtcaaggaaggctcggtcgtgctgacgctcgaagtcgacggt
gccgccgcgcccgcgccggctgcggcggcacccgcacccgccgcagccgctgctgcgcct
gcgcccaaggcggctgcaccggcccccgccgcggcagcgtcggtggtggtgtccagctac
ggcggcaaggtcgatgtcgagtgcgacgtggtcgtgctcggcgccggccccggcggctac
tcggccgccttccgcgcggccgacctcggcctgaaggtcgtgctgatcgaacgctacgcc
acgctcggcggcgtgtgcctgaacgtcggctgcattccctcgaaggcgctgctgcacgtg
gcttccgtcatggacgaggtgaagcacttcgccgacctgggcgtgagcttcgctgcgccc
acggtcgaccgcgccaagctgctcggccacaagaacaaggtggtgggcaagctcaccggc
ggcctcacggccatggccaagatgcgcaaggtgacggtgctgcgcggcgtgggcaacttc
atcgacccgtaccacctggaagtcgaagagacctccggcacgagctgggacaccaccggc
aagaagcagaccgtcaagttccgcaacgccatcatcgcggccggctcgcagtcggtcagc
ctgcccttcatgccgaaggacccgcgcgtggtcgactcgaccggcgcgctcgagatgggc
accgaccccaagcgcatgctggtgctgggcggcggcatcatcggcctcgaaatgggcacc
gtgtattcgacgctgggcgcgcgcctcgatgtggtcgagatgctcgacggcctcatgcag
ggcgccgaccgcgacctcgtgaaggtctggcagaagatgaacgcgccgcgcttcgacaac
atcatgctcaagaccaagacggtcggcgccgaagccacgaaggaaggcatcaaggtcacc
ttcgagggcgagaacgcgccgaaggaaccgcaggtgtacgacctcgtgctgcaggccgtg
ggccgcagccccaacggcaagaagatcggtgccgagaaggccggcatcacggtgagcgac
cgcggcttcattccggtcgacatccagatgcgcaccaacgtgccgcacatcttcgcgatc
ggcgacatcgtgggccagcccatgctggcgcacaaggcggtgcacgaggcgcatgtggcg
gccgaagtgatcgccggcgagcagaagggcgacaaggagctgtccagcgccgccttcaac
gcccgcgtgatccccagcgtggcctacaccgaccccgaagtggcatgggtcggtctcacg
gaagaccaggccaaggccgaaggcatcaaggtcaagaagggccacttcccgtggaccgca
tcgggccgcgccattgccaacggccgcgacgaaggcttcaccaagctgctgttcgacgcc
gagacgcaccgcatcctgggtggcggcatcgtcggtacgcacgccggcgacatgatcggc
gagatcgcgctggccatcgagatgggcgcggacgagatcgacatcggcaagaccatccac
ccgcacccgacgctgggcgaaagcatcggcatggcggccgaagtggcgcacggcacctgc
acggacctgccgccggcgaagaaggcggcctga

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