Variovorax boronicumulans: CKY39_20180
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Entry
CKY39_20180 CDS
T05068
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo00010
Glycolysis / Gluconeogenesis
vbo00020
Citrate cycle (TCA cycle)
vbo00260
Glycine, serine and threonine metabolism
vbo00280
Valine, leucine and isoleucine degradation
vbo00310
Lysine degradation
vbo00380
Tryptophan metabolism
vbo00620
Pyruvate metabolism
vbo00630
Glyoxylate and dicarboxylate metabolism
vbo00640
Propanoate metabolism
vbo00785
Lipoic acid metabolism
vbo01100
Metabolic pathways
vbo01110
Biosynthesis of secondary metabolites
vbo01120
Microbial metabolism in diverse environments
vbo01200
Carbon metabolism
vbo01210
2-Oxocarboxylic acid metabolism
vbo01240
Biosynthesis of cofactors
Module
vbo_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vbo_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
vbo_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
vbo_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
CKY39_20180 (lpdA)
00020 Citrate cycle (TCA cycle)
CKY39_20180 (lpdA)
00620 Pyruvate metabolism
CKY39_20180 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
CKY39_20180 (lpdA)
00640 Propanoate metabolism
CKY39_20180 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
CKY39_20180 (lpdA)
00280 Valine, leucine and isoleucine degradation
CKY39_20180 (lpdA)
00310 Lysine degradation
CKY39_20180 (lpdA)
00380 Tryptophan metabolism
CKY39_20180 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
CKY39_20180 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vbo04147
]
CKY39_20180 (lpdA)
Enzymes [BR:
vbo01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
CKY39_20180 (lpdA)
Exosome [BR:
vbo04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
CKY39_20180 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Biotin_lipoyl
Pyr_redox
FAD_oxidored
GIDA
Thi4
AlaDh_PNT_C
FAD_binding_2
Pyr_redox_3
NAD_binding_8
HI0933_like
Biotin_lipoyl_2
FAD_binding_3
DAO
DEC-1_N
GCV_H
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
ATA55275
UniProt:
A0A250DLN6
LinkDB
All DBs
Position
complement(4338687..4340519)
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AA seq
610 aa
AA seq
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MSEQHIKVPDIGDFDEVAVIEVLVNVGDTVKAEQSLITVESDKASMEIPSSAAGVVKSLA
VKVGDKVKEGSVVLTLEVDGAAAPAPAAAAPAPAAAAAAPAPKAAAPAPAAAASVVVSSY
GGKVDVECDVVVLGAGPGGYSAAFRAADLGLKVVLIERYATLGGVCLNVGCIPSKALLHV
ASVMDEVKHFADLGVSFAAPTVDRAKLLGHKNKVVGKLTGGLTAMAKMRKVTVLRGVGNF
IDPYHLEVEETSGTSWDTTGKKQTVKFRNAIIAAGSQSVSLPFMPKDPRVVDSTGALEMG
TDPKRMLVLGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRDLVKVWQKMNAPRFDN
IMLKTKTVGAEATKEGIKVTFEGENAPKEPQVYDLVLQAVGRSPNGKKIGAEKAGITVSD
RGFIPVDIQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEVIAGEQKGDKELSSAAFN
ARVIPSVAYTDPEVAWVGLTEDQAKAEGIKVKKGHFPWTASGRAIANGRDEGFTKLLFDA
ETHRILGGGIVGTHAGDMIGEIALAIEMGADEIDIGKTIHPHPTLGESIGMAAEVAHGTC
TDLPPAKKAA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacaacacatcaaggtgccggacatcggcgacttcgacgaagtcgcggtgatc
gaggtgctggtcaacgtcggcgacacggtcaaggccgagcagtcgctcatcacggtcgaa
tcggacaaggcttcgatggaaattccctcgtcggccgccggcgtggtgaagtcgctggcc
gtgaaggtgggcgacaaggtcaaggaaggctcggtcgtgctgacgctcgaagtcgacggt
gccgccgcgcccgcgccggctgcggcggcacccgcacccgccgcagccgctgctgcgcct
gcgcccaaggcggctgcaccggcccccgccgcggcagcgtcggtggtggtgtccagctac
ggcggcaaggtcgatgtcgagtgcgacgtggtcgtgctcggcgccggccccggcggctac
tcggccgccttccgcgcggccgacctcggcctgaaggtcgtgctgatcgaacgctacgcc
acgctcggcggcgtgtgcctgaacgtcggctgcattccctcgaaggcgctgctgcacgtg
gcttccgtcatggacgaggtgaagcacttcgccgacctgggcgtgagcttcgctgcgccc
acggtcgaccgcgccaagctgctcggccacaagaacaaggtggtgggcaagctcaccggc
ggcctcacggccatggccaagatgcgcaaggtgacggtgctgcgcggcgtgggcaacttc
atcgacccgtaccacctggaagtcgaagagacctccggcacgagctgggacaccaccggc
aagaagcagaccgtcaagttccgcaacgccatcatcgcggccggctcgcagtcggtcagc
ctgcccttcatgccgaaggacccgcgcgtggtcgactcgaccggcgcgctcgagatgggc
accgaccccaagcgcatgctggtgctgggcggcggcatcatcggcctcgaaatgggcacc
gtgtattcgacgctgggcgcgcgcctcgatgtggtcgagatgctcgacggcctcatgcag
ggcgccgaccgcgacctcgtgaaggtctggcagaagatgaacgcgccgcgcttcgacaac
atcatgctcaagaccaagacggtcggcgccgaagccacgaaggaaggcatcaaggtcacc
ttcgagggcgagaacgcgccgaaggaaccgcaggtgtacgacctcgtgctgcaggccgtg
ggccgcagccccaacggcaagaagatcggtgccgagaaggccggcatcacggtgagcgac
cgcggcttcattccggtcgacatccagatgcgcaccaacgtgccgcacatcttcgcgatc
ggcgacatcgtgggccagcccatgctggcgcacaaggcggtgcacgaggcgcatgtggcg
gccgaagtgatcgccggcgagcagaagggcgacaaggagctgtccagcgccgccttcaac
gcccgcgtgatccccagcgtggcctacaccgaccccgaagtggcatgggtcggtctcacg
gaagaccaggccaaggccgaaggcatcaaggtcaagaagggccacttcccgtggaccgca
tcgggccgcgccattgccaacggccgcgacgaaggcttcaccaagctgctgttcgacgcc
gagacgcaccgcatcctgggtggcggcatcgtcggtacgcacgccggcgacatgatcggc
gagatcgcgctggccatcgagatgggcgcggacgagatcgacatcggcaagaccatccac
ccgcacccgacgctgggcgaaagcatcggcatggcggccgaagtggcgcacggcacctgc
acggacctgccgccggcgaagaaggcggcctga
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