Vibrio cyclitrophicus: FAZ90_00230
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Entry
FAZ90_00230 CDS
T06393
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03420
Nucleotide excision repair
vcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FAZ90_00230 (uvrD)
03430 Mismatch repair
FAZ90_00230 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcc03400
]
FAZ90_00230 (uvrD)
Enzymes [BR:
vcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAZ90_00230 (uvrD)
DNA repair and recombination proteins [BR:
vcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAZ90_00230 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
FAZ90_00230 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
QCI69611
LinkDB
All DBs
Position
1:47111..49285
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AA seq
724 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSSSGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
IRLLRRLIKAQNLDEKQWPAKQASWWINGKKDEGLRPNHIDAYHDPITQTWLKIYSAYQE
ACDRAGLVDFAEILLRSHELLRDKKHIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
DCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFPGASTVRLEQNYRSTKTILQASNELISN
NTERMGKELWTDGNDGEPISVYSAYNELDEARFTVSKIKEWQEKGGALEDTAMLYRNNAQ
SRVLEEALIQGGLPYRIYGGMRFFERQEIRDALSYLRLMSNRSNDAAFERVVNTPTRGLG
DKTLETIRLAARDRGATMWEASVALIEEQVLPGRAAGALSRFIELINALEDDTIELRLHE
QTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEADEMSMLTAFLTHAA
LEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVKHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR
LEQL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccttcgcttttactcgatggcctaaacgacaaacaacgtgaggcggtcgcg
gcacctttagaaaacctacttattctggcaggtgctggtagtggtaaaacgcgagtgttg
gtgcatcgtattgcttggctgcaaagcgtagagcaagcatcaccgttctctattatgtcg
gttaccttcaccaacaaagcggcagcagagatgcgtggtcgtattgaagagctgatgatg
ggcagctcgtcaggcatgtggaacggcaccttccacggtatttgtcaccgtattcttcgt
gctcactacctagatgcaaaactgccagaagacttccagatcattgattcagatgatcag
attcgcttactacgtcgcttaatcaaggcgcaaaaccttgatgaaaagcagtggccagcc
aagcaagcttcttggtggatcaatggtaaaaaagatgaagggctgcgcccaaatcacatt
gacgcctaccatgatccaatcactcaaacgtggttaaagatttactctgcttaccaagag
gcatgtgatcgtgctggcttggtcgactttgctgagatcttgttgagatcgcatgaacta
ttgcgcgataagaaacacatccgcgaacactatcaagctcgctttaagcatattcttgtc
gacgaattccaagataccaacaacatccaatacgcttggctacgtatgatggcaggcccg
gattgtcgtgtgatgatcgtgggtgatgatgaccaatctatctatggctggcgcggcgcg
aaaatcgaaaatattcagaagttcttggatgaattcccaggcgcttcaacggttcgactc
gaacaaaactaccgttcaaccaaaaccattctgcaggcatcgaacgagcttatctcgaac
aacaccgagcgtatgggtaaagaattgtggaccgatggcaacgatggcgagccaatctca
gtttactcggcttataacgagttagatgaagcgcgtttcacagtcagcaaaatcaaagag
tggcaggagaaaggcggtgcgctagaagatactgcaatgctttatcgtaataatgcccag
tctcgtgttcttgaagaagctttgattcaaggtggtctaccttaccgaatctacggcggc
atgcgattcttcgagcgtcaggaaatcagagatgctttgagctacctgcgcttaatgagt
aaccgcagcaatgatgcggcgtttgaacgtgtcgtcaatacgccaacgcgtggcttgggc
gataaaacgctagaaacgattcgtcttgcagcgcgtgatcgtggtgcaaccatgtgggaa
gccagtgttgctctgatagaagaacaagtgttaccaggccgtgctgcaggtgctttgagc
cgctttattgagcttatcaatgcacttgaagatgacactatagaactgagacttcatgag
caaaccgaccacgtaatcaaatcgtcgggtttgtttgcgatgtacgagcaagagaaaggc
gaaaagtcgaaggcacgtattgagaacttggaagaattggtaacggcaacgcgtcagttt
gaaaagccagaagaagcggatgaaatgagcatgctaacggcgttcttaactcatgcggct
ttggaagcaggtgaaggtcaggctgacgagtttgatgatgcggttcagctcatgactctg
cacagtgccaaaggcctagagttcccaatggtattcatggttggcgttgaagagggtatg
ttcccaagccagatgtctgcagaagaggcagggcgcttagaagaagagcgtcgcctgtgt
tacgtaggcatgacgcgtgcgatggagaagctttacataacttacgcagagatgcgtcgc
ttgtacgggcaagacaagtaccacaaaccgtcacgctttattcgtgagctgcctgagaca
tgtctggatgaagtgcgtatgaaagcgcaagtgagccgtcctgcaagcagcggtcgcttt
agccaaaccgccgtgaaagagaactttaacgaaacaggctttagtttgggttctcgcgtt
aagcaccctaagtttggtgaaggcactatcatcaactttgagggaagtggcccacaaagc
cgagttcaagtcgcgtttaacggtgaagggattaagtggttagtaacggcttacgctcga
ctagagcagctttaa
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