Vibrio cholerae O1 MJ-1236: VCD_003130
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Entry
VCD_003130 CDS
T00903
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VCD_003130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_003130
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VCD_003130
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
HHH_5
UVR
GIY-YIG
HHH
HHH_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACQ61290
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Position
1:complement(2370749..2372515)
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AA seq
588 aa
AA seq
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MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH
NYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRETL
HLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQGK
DNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQEN
GIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILNR
GLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKMNHKMTISQRF
KALQEELGMDAITRMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNITGITGGDDYA
AMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVT
RKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIE
GVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQALKQ
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtataacgctgaggctgaagtgatttatgtcggcaaagccaaagacctcaaaaagcgt
ctaaccagctattttcgcaagaatctcgacagcgaaaaaaccaaagctctcgtcagcaac
atcgccaagattgacgtgacggtcacccacaccgaaacggaagcattgatccttgagcac
aattacatcaagcagtatctgcctaagtacaacgtgctgctgcgtgatgataagtcttat
ccctatattttcttaagcgcgcacaaacacccgcgactgtcctcacatcgtggtgccaaa
aaacgccgtggtgaatatttcgggccttatccggattcgggggcagtgcgtgaaactctg
catttgatccagaaaatctttcccgtccgtcagtgtgaagatacggtgtacagcaaccgt
actcgaccttgcttgatgtatcagattgggcgctgtgccggaccttgtgtgaaaggactg
atttctgaccaaggctatcaagagatcgtccattacctacgtcttttcctgcaaggcaaa
gacaaccaagtactgtcgattctggttgagaaaatggagcaggcgagccgtgaactgcgt
tttgaagatgccgctaaagcgcgtgaccaaattcaagccattcgccgcgtacaagagcag
cagtttgtgtcggacgacagtttggaagacttggatgtgctcggttttgcacaagaaaat
ggcattgcttgcatccatattttgatgatccgccaaggcaaagtgctcggcagtcgtagc
cattttccgaaaattccaagtgacacctcgcaggtcgaagtgtttgagagctttttaagc
caatattatttaagtcacagtgaagctcgcagtattccggcacggatcattttaaatcga
ggattgaccgaagaaaccgaggcgctacaaatcgcgatcagtgaacttgcagggcgcaaa
gtcactttccatgtcaatcccaccggcacgcgaggtcgttatctgaaactcgccaatacc
aacgcgctgacggcgatcacgactaagatgaatcacaagatgaccatcagtcagcgcttc
aaagccctgcaagaagagctcggaatggatgcgattacccgcatggagtgttttgatatc
tcgcataccatgggcgaaagcacgatggcctcttgtgtggtgtttaaccaagaagggccg
ctaaagcaagagtatcggcgttacaacatcacgggcatcactggtggggatgattacgcg
gcgatggcgcaagtgttggagcgccgttacagtaagcagcttgatagcagcaaaattccc
gacattatttttattgatggtgggaaagggcagcttaatcgtgcgtacgaaattatctcc
tcatgttggcaggattggccgaagtacccgaagatcatcggcatcgccaaaggggtgaca
cgtaaacctggtttagaaacgctgatcactattgatggtgatgagtttcatctgccgagt
gatgcgcctgcgttgcacttaattcaacacattcgggatgaaagccataaccacgcgatt
gcaggacaccgcgcgcagcgcggaaaaactcgccgtaccagtacacttgagggtatcgaa
ggcgtcgggccgaaacggcgtcaagccttgctgaaatatctgggtggtatgcaggagtta
aaacgcgcttctgttgaagaaatcgccaaagtgccgggcatcagccacgcattggcagaa
aacatttatcaagcattgaaacaataa
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