Vibrio cholerae O1 LMA3984-4: VCLMA_A1272
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Entry
VCLMA_A1272 CDS
T01871
Name
(GenBank) Toxin secretion transporter, putative
KO
K12531
ATP-binding cassette, subfamily B, bacterial RtxE
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VCLMA_A1272
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vcl02000
]
VCLMA_A1272
02044 Secretion system [BR:
vcl02044
]
VCLMA_A1272
Transporters [BR:
vcl02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
VCLMA_A1272
Secretion system [BR:
vcl02044
]
Type I secretion system
RTX toxin transporter
VCLMA_A1272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
AAA_16
SMC_N
AAA_22
AAA_18
AAA_21
AAA_29
ABC_ATPase
MeaB
Tmemb_9
PRK
Rad17
AAA_30
nSTAND1
RsgA_GTPase
AAA_28
SbcC_Walker_B
Motif
Other DBs
NCBI-ProteinID:
AEA78511
LinkDB
All DBs
Position
I:complement(1439119..1441284)
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AA seq
721 aa
AA seq
DB search
MNTPFTTDAHRDAEQTLPQESPSNNWGIEAVVYAGQQFHKKSTSSQLKHALGVSHANLTD
MEMREAADYLGLKSQITKLSIQAFNTLPLPALIEYQGGWKVMIQTDDNGWTAYDPATDSL
HTLSFTSAESTAHYKVMLIADESLSVKEVKFGLSWFAPSILRQKSQLRDVFLYAIALQIF
ALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEPAYSYLRNTVFGHLASQVNAEL
SGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMF
HYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYESDANATTFLTEAVTGIETIKTTA
TEHRFLEQWQRILSQQLNRGFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAVLKGEITP
GQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQGLASVPELDG
GIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQV
LVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALA
FIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEAAIMS
NMDEICRGRTVISIAHRLNTIRHADNIFVLDKGHVAESGTHEELLAQQGLYAKLWTQQVG
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccccgtttacaaccgacgctcacagggatgctgaacaaacgttaccacaagag
tctccaagcaataattggggtatcgaagctgtggtctacgcaggtcagcaatttcacaaa
aaatcgaccagctcgcaactgaaacacgcgctaggggtaagccacgccaatctcactgac
atggaaatgagagaggccgccgactatcttggcctgaaaagccaaataacaaagctcagt
attcaagcgttcaatacgctgccactccccgctcttatcgaatatcagggtggctggaaa
gtgatgatccaaaccgatgataacggttggacggcctacgatcctgcaaccgactctctg
cacacactctcgttcacatcggctgaatccaccgcgcattacaaagtcatgctgattgca
gatgagtctctgagtgtcaaagaggtcaaatttggtttaagctggttcgccccttccatt
cttcgtcaaaaaagccaactgcgagatgtgtttctttacgccatcgcgctacagatattt
gcgctggttagcccgatgctgtttgaaaatgttatcgataaagtgctcgtgggacgaagc
ctatcaagcttgcatgtgctggcgctggcgatgttagcgttagcgatagctgagccagca
tacagctatttacgcaataccgtatttggccatcttgcaagccaagtgaatgccgagctg
tcaggccgactctatcggcacttagtcggtctgccattaacctatttcaagcagcgccaa
actgggcaaattattgcgcgagtgcgtgaaatggcgcaaatccgtcagtttctgacgggt
tcgactttgatgctattacttgatctgatttttgtgacggtttttctcgctgtcatgttc
cattacgccagtacactgacttggttagtgattggctcgcttgtgatttattttgtgttg
tggctgattgcaggaccgctgatccgcaaaaaagtggaatctgaatacgagtccgacgct
aatgccacgacatttttgaccgaagccgttaccggtattgaaaccatcaaaacgaccgca
acggagcatcgctttctcgagcagtggcaacgcattcttagccagcagctaaaccgtggc
tttgatgcacaaaaatcggggttaatcgctgggcaagctatcgctctggtgcaaaagctg
acggcggcactgctgctttggtggggcgtgagcgcggtactcaaaggtgaaatcactccc
ggtcagttagtggccttcaatatgctcgccggccatgtgactcagccagtcctgcgactg
gcacaaatttggcaggattttcagcacactcttatcgcactgagacgggttggcgatatt
ctcgatgaaccgagagaaaacagtaaacaaggcttagcgtccgtgcccgaactcgatggt
ggcattgagtttagtaacattcgctttcgttaccaccaagatgcccctgaggtactggcc
aatctatcactcaagatcaaaccggggcaatttatcggcgttactggaccatcaggttca
ggcaagagcacactcactcgcctgctgcaacgcttgtacgttccgcaacatggtcaagtg
ctggtggacggaatggatcttgcgattgcggatcccgtgtctctgcgccgcaatatgagt
gtggtactacaagagagcattcttttttccggaagtgtggcggacaatattcgtttatgt
aaaccgcaggccagcgatgaagaaatccgtcatgccgctcaattagcaggtgcgttagca
tttattgaaggacttccccacggttttaaccaaccggttggggaaaaaggtgcagcgctt
tcgggaggtcaaaggcaacgtatcgccttagcgagagccttgctggtcaatcctagaatc
ttactgctggatgaagcgacctctgctctcgactacaattctgaagcggcaatcatgagc
aatatggatgaaatatgtcgtggtcgtactgtgatcagtattgcccatcgcctcaatacc
atccgccatgctgacaacatctttgtattggataaaggacatgtcgccgaaagcggtaca
catgaggaactgcttgcccagcaagggctgtacgccaaactttggacgcaacaagtggga
gaatag
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