KEGG   Vibrio cholerae O1 M66-2: VCM66_1483Help
Entry
VCM66_1483        CDS       T00891                                 

Gene name
ligA-2
Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vcm  Vibrio cholerae O1 M66-2
Pathway
vcm03030  DNA replication
vcm03410  Base excision repair
vcm03420  Nucleotide excision repair
vcm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vcm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VCM66_1483 (ligA-2)
   03410 Base excision repair
    VCM66_1483 (ligA-2)
   03420 Nucleotide excision repair
    VCM66_1483 (ligA-2)
   03430 Mismatch repair
    VCM66_1483 (ligA-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcm03032]
    VCM66_1483 (ligA-2)
   03400 DNA repair and recombination proteins [BR:vcm03400]
    VCM66_1483 (ligA-2)
Enzymes [BR:vcm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VCM66_1483 (ligA-2)
    6.5.1.6  DNA ligase (ATP or NAD+)
     VCM66_1483 (ligA-2)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VCM66_1483 (ligA-2)
DNA replication proteins [BR:vcm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VCM66_1483 (ligA-2)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VCM66_1483 (ligA-2)
DNA repair and recombination proteins [BR:vcm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VCM66_1483 (ligA-2)
   NER (nucleotide excision repair)
    Other NER factors
     VCM66_1483 (ligA-2)
   MMR (mismatch exicision repair)
    Other MMR factors
     VCM66_1483 (ligA-2)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACP05797
UniProt: C3LMM1
LinkDB All DBs
Position
I:complement(1602710..1603558)
Genome map
AA seq 282 aa AA seqDB search
MLIRLTLTAAAIMLAQQTLANDGPLAFIPITYANNYQHGIDIFDYWKSEKLDGIRAIWTG
KQLVTRNGNPIAAPAWFTESLPSYSLEGELWAGRGNFSLVQQTVLDSQPADSAWRKISLM
LFDMPDAAGDYSKRYYNLIHLVNSLDLKHIRYVEHTPIKSEAELLSYLDNISEKSGEGVM
LRKISARYQAGRSNDLLKLKRHQDAEATVIGYRLGMGKYKGKMGSMLVRTAEGLEFYIGS
GFSDVERAEPPKIGSVITYRYNGLTTEGKPRFARFVRVRENY
NT seq 849 nt NT seq  +upstreamnt  +downstreamnt
atgcttatacgactgacgctcaccgctgccgcgatcatgctggcccagcaaacgctggcc
aatgatgggccgctggcttttattccaattacttacgccaacaactaccaacacggcatt
gatattttcgattactggaaaagtgagaagcttgacggtatccgcgcgatttggacgggg
aaacaactggtcactcgtaacggtaaccctattgctgcccccgcttggtttaccgagtcg
ttaccctcttattcactcgaaggtgaattgtgggcagggcgcggcaatttctcactggta
cagcaaacggttttagatagccaaccggctgactccgcatggcgcaaaatcagcctaatg
ctgttcgatatgcctgatgcggcgggcgattacagtaagcgctattacaacctcatccat
ttggtgaatagccttgatctcaagcatatccgatatgtcgaacacaccccgataaaatct
gaggcggaactgctttcctaccttgataacatcagtgagaaatcgggggaaggggtaatg
ctgcgcaaaatcagcgctcgctatcaggcagggcgaagtaatgatttgttgaagctgaaa
aggcatcaggatgcagaagcaaccgtgattggttatcggctcggcatgggaaaatacaaa
ggtaaaatgggctctatgctggttcggaccgcagaggggctagaattttatatcggcagt
ggatttagtgatgtcgagcgcgccgagccgcccaagattggtagtgttatcacctaccgt
tacaacggacttacaacggaaggcaaaccaaggtttgcccgttttgttcgggtcagagaa
aactattga

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