Vibrio cholerae O1 M66-2: VCM66_1954
Help
Entry
VCM66_1954 CDS
T00891
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vcm
Vibrio cholerae O1 M66-2
Pathway
vcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCM66_1954 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcm03019
]
VCM66_1954 (rne)
03009 Ribosome biogenesis [BR:
vcm03009
]
VCM66_1954 (rne)
Enzymes [BR:
vcm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VCM66_1954 (rne)
Messenger RNA biogenesis [BR:
vcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VCM66_1954 (rne)
Ribosome biogenesis [BR:
vcm03009
]
Prokaryotic type
rRNA processing factors
VCM66_1954 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
ACP06257
UniProt:
C3LNY1
LinkDB
All DBs
Position
I:2118463..2121621
Genome browser
AA seq
1052 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA
LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL
SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP
HFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAV
PAPTPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPR
RERNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRN
ERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRR
KLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRR
NRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETA
EGAQHVTHVTPTAATAVVESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEP
VITDVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVV
AQTTVEVIADKMAEPIKVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNA
APLRAERYQARGAGSQVARNQASAGMSKPQSF
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgat
ggccaacgtctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaat
atctacaaaggccgcattacccgcattgaacccagtcttgaagctgcattcgttgactac
ggtgctgaaagacacggtttcctccctctcaaagaaatcgctcgtgaatacttccctgat
ggttatagctaccaaggtcgtccaaacatcaaagatgtgctgaacgaaggtcaggaagtg
atcgtgcaaatcgagaaagaggagcgcggtagcaaaggtgcagccctaaccacctttatc
tctctagcgggcagctacttagttctgatgccaaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggcgatgagcgcactgaactgaaatcagcactcagctcactagaattg
ccacaaggtatgggcttaattgttcgtaccgcaggcgtaggtaaaagcgctgaagagcta
gagtgggacttaaatgtactgcttaagcactggagtgcgattaaacaagcgtctgattca
aaccctgcacctttccttatccaccaagaaagtaacgtgattgttcgtgcgatccgtgat
tacttgcgtcgtgatattggtgaaattcttatcgacagcaacagcatttacgagcgtgct
cttgagcatatccgtttagtgcgcccagatttcgtcaatcgtgtgaaaaaatacgaaggc
gaagtaccgctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgt
gaagttcgcctgccttctggtggttcaatcgttattgacccaaccgaagccttgacttcc
atcgacatcaactctgctcgcgcaaccaaaggtggcgatattgaagagaccgctctcaat
accaacctagaagctgcagatgaaatcgcacgccaattgcgtctgcgtgacctcggtggt
cttgtggtgatcgacttcatcgatatgacccctgttcgccaccagcgtgaagtggaaaac
cgtctacgtgaagcggtgcgtgttgaccgtgctcgcgttcaaattggccgtatttctcgc
tttggtttgctggagatgtcgcgtcaacgtttgagcccttctctggcagaagcaagccat
cacatctgtcctcgttgtaaaggaaccggcgtgattcgtgacaacgaatctttggcactt
tctgttctgcgcttaattgaagaagaagcactcaaagacaacacatcgcaagtgcttgcg
gtggtacctgtctctatcgcgtcttatctgttaaacgagaagcgtcgctcaatcaatcac
attgaaaaagcgcagcaagttcgcattactatcgtgccaaattccgatatggaaacaccg
cactttgaagtgatccgcgtgcgtgaaggtgaagagcaagatgttctctcttacctgatt
ccgaaaaagctggaagcgatgaaagaagcggaaggcaaagaagtggtcgatgttgagctc
aaaccaaaacgtattgaagagccagtactgaaaggttttgcagcgcctgcggaagcggtt
cctgctccaacaccaaaacctaaagcagaacctcaacctgttgcagaggtacagcaacct
gcgcagcctggtttctttagccgtgtgtttaaagcgattgcgagcctattctctgcgaca
ccggaagcggccaaagtagaagcgcctgtaacgcagaatagtgaacaagacaaacctcgt
cgtgaacgtaacgatcgtaataatgatcgtcgtcgtaaccctcgtgacaaaaaccgtcgc
cgcggtaatgaggaaaacaacgagcgtaacgataaagagacatcaaacagcaaccgtaag
ccacaagagcgcaagccaaagcaagagcgtggtgagcgtaacgaacgtaatgaccgcaat
gaacgtccagaaaccgagcgtccagaacgtcaagatcgtcgtaataaacgagatgaaagt
aaaacggctaaattgcttgagcaaggtcgccaattagcggctgaagcacaacaagaagtt
aaagccgttgagcctaaagaagagaaagccgcggttgttaaagaacgtcgtcaacgtcgt
aagctctcgaagcaaattcgagtcaaagatcagcttgccgcagaagagttagacaacctg
tctacagctcctgttgacaatgcgttcgacgctccagcgccagttaatctgcctgtaacc
gatgattttgcggattcggctcaagaggataacgagcaagatgatcagaagcagcgtcgt
aatcgccgctcgccacgtcatctgcgcgccagcggccagcgccgccgtcgtggtcgtgat
cgtcgccctaacccattccgcctgcgtaaaggtggggttgcctctcctgagatggccatg
ggtaaagtgatgcctcgctacgacttagcgccgcgtccacagtcacgccatgaaactgct
gaaggtgctcaacatgtgactcatgtaacaccgactgcggcaactgcagtagtagaaagc
gaaaaagtggcagcgccacgtgtactcggaggcgttgccttcccagaaatggcgatgggt
aaagtcatcgtacgtcgtgaaactgctgcggttcaacctgagccagtagtgcaagagcca
gtgattactgacgtgatcgcagagacactcatcgcacccgttgagccggtcgtggttgaa
gctacagtgattgaagctccggtaattgaagagtcagcaacagaaactgctgcgctagaa
accgtagtggcgaaagtcgctgaagtcgaagagccagccacaatcagtgacgaggttgtc
gcacaaacgacggttgaagtgatcgcagacaaaatggcagaaccaattaaggttgttaag
ccagtgacagtgagtgcaacatcactcaccgcgaaagcggtcatccaacagccgtacgcc
tcatcgccgatgactaaagcacctggctcagatgacatccgtgaagtgcaggttaacgcc
gcgcctttacgtgctgaacgttaccaagcgcgtggtgcgggtagtcaagtcgcgcgtaat
caagccagtgcgggcatgagtaagccgcaaagcttctaa
DBGET
integrated database retrieval system
