Vibrio cholerae O27 10432-62: VAB027_319
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Entry
VAB027_319 CDS
T03829
Name
(GenBank) VacB and RNase II 3'-5' exoribonucleases family protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vcz
Vibrio cholerae O27 10432-62
Pathway
vcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAB027_319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcz03019
]
VAB027_319
03016 Transfer RNA biogenesis [BR:
vcz03016
]
VAB027_319
Enzymes [BR:
vcz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VAB027_319
Messenger RNA biogenesis [BR:
vcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VAB027_319
Transfer RNA biogenesis [BR:
vcz03016
]
Prokaryotic type
tRNA degradation factors
VAB027_319
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AKB05207
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All DBs
Position
351654..353087
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AA seq
477 aa
AA seq
DB search
MKHKISSKNPQAEAWGFVYKRQVYGYPMDNGQWKLFVAIADVSHYVQPNDPLDLEAQTRA
TSVYFPGYVVPMLPEALSNGLCSLNPNVDRLVLVCEMTFDDAGIMLDAEFSEGLIHSHAR
LTYNQVNETILKPNQWSHSRSNKVEKHLLNLHRLYLNLLGQRQVRGAIDFDTQELAFTLD
NKKKIASIDPVIRNDAHRMIEEFMLCANVATAAFLQEHKIPSLYRVHAGPQMKKLASLRM
MLADKGLVLGGGDRPTSHDYNALLEQVHDLEEGDVIRTLLLRSQSQAEYSPKNQGHFGLA
YGAYAHFTSPIRRYPDLLVHRAIRSKLREQAKGTFQRLLSKLKSLGQCTGGSTNYPYDSK
AIEQLSVHCSHQSRQADEVSREVENVLKCHYMKPFIGQNFTGRVSGVTHFGLFVELELNR
IEGLIPLSSFQNGEFEFDGVRQKIVSQTATFALGTQVEITVKEVDAKQRRILFSFAE
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaacataaaattagttcaaaaaatccccaagcagaggcttggggatttgtgtataag
agacaggtctatggctacccgatggataatggtcaatggaaactgttcgtagctatcgca
gatgtatctcattatgttcagccgaatgatcccttagatcttgaagcccaaactcgcgca
acgtcagtttattttccaggttatgtcgtccctatgttgcctgaagccttatcgaatggt
ttgtgttctctcaatccgaatgttgaccgcttggtcttagtgtgtgaaatgacctttgat
gatgcgggtattatgctggatgccgagttttctgaaggccttattcactcccatgctcgg
ttgacctataaccaagtcaacgagacgattcttaaaccgaatcaatggagtcattctcgt
tcaaacaaggttgagaaacacctactcaacctgcatcgtttatatctgaatttactgggg
caacgtcaagtgagaggagcgattgattttgatactcaagaactcgcgtttactttagat
aataagaagaaaattgcctcgatcgatcctgttattcgtaatgatgcgcaccgaatgatt
gaggaattcatgttgtgtgcgaatgtggctaccgcggcgtttttacaagagcataaaatc
cccagcctatatcgtgtgcatgctggccctcaaatgaaaaagcttgcttcactgcgcatg
atgctggccgacaaaggcttagttctcggtggtggtgatagaccgacgtcgcatgattac
aacgcgctgttagagcaggttcatgatttagaagaaggggatgtgattcgtactttgttg
ttacgttcgcaaagccaagctgaatattcaccgaaaaatcagggacactttggcttagct
tatggggcttatgcgcactttacttcacccattcgccgttatcctgatctgctggtacac
cgagcgatccgttctaaactacgtgaacaagcgaaagggacgtttcagcgtctactgagc
aagctcaaatcgctcggtcaatgcactggtgggtcaaccaattatccttatgatagcaag
gcgattgagcaattaagtgtgcattgttctcatcagtctcgtcaggccgatgaggtgagc
cgtgaggtcgagaatgtgttgaagtgtcactatatgaagccctttatcggtcaaaacttt
actggtcgagtctctggcgtaacccattttggtctgtttgttgagctagaattaaaccga
atcgaaggtttgattcccctctctagcttccaaaatggagagtttgagtttgatggggtg
agacaaaaaatcgttagtcaaaccgcaacttttgcgttgggtactcaagtcgaaattacg
gtgaaagaagttgacgctaaacaaaggagaatcctgtttagttttgctgagtag
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