KEGG   Verticillium dahliae: VDAG_03983Help
Entry
VDAG_03983        CDS       T03450                                 

Definition
(RefSeq) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vda  Verticillium dahliae
Pathway
vda03030  DNA replication
vda03410  Base excision repair
vda03420  Nucleotide excision repair
vda03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VDAG_03983
   03410 Base excision repair
    VDAG_03983
   03420 Nucleotide excision repair
    VDAG_03983
   03430 Mismatch repair
    VDAG_03983
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vda03032]
    VDAG_03983
   03400 DNA repair and recombination proteins [BR:vda03400]
    VDAG_03983
Enzymes [BR:vda01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VDAG_03983
    6.5.1.6  DNA ligase (ATP or NAD+)
     VDAG_03983
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VDAG_03983
DNA replication proteins [BR:vda03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VDAG_03983
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VDAG_03983
DNA repair and recombination proteins [BR:vda03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VDAG_03983
   NER (nucleotide excision repair)
    Other NER factors
     VDAG_03983
   MMR (mismatch excision repair)
    Other MMR factors
     VDAG_03983
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 20705446
NCBI-ProteinID: XP_009652362
UniProt: G2X154
LinkDB All DBs
Position
3
AA seq 813 aa AA seqDB search
MPSPTKKRKLNKDASGPTSRGLEYFFSKQKQGDASAASTQPQPKQDVGEAPRSEQEFTDE
ELARKLQAEWDSEVQNTESLSTESQLVPRCSASPALDPSSTGSAQVAISAATPVEEPKLA
STAPKTLSLSSVAVAGDSLSSTIPLDQSPLVFDPSEYSSHLKDHWASEGGDASYALLTRC
FILVNSTQSRIKIVDTLVNCIRLIIQTDPESLLPAVWLATNAISPPYISLELGLGGSAIS
KALKQVCGLNGPSLKNLYDKYGDAGDVAFEAKKKQSFTLRKPKPLTIKAVYQSLVKIANT
QALARAFSLTSPPGADFAVRDRGSLAKLKKEELAEVWAKAEEIVKACFAKRPNYNDLVPI
LLEIGVCDELLIRCGLTLHIPLRPMLGSITRDLTEMLTKLQGRDFACEYKYDGQRAQIHC
DAKGKVSIFSRHLELMTDKYPDLVALMPQIRGEGVDSFVMEGEVVAIDRQTGDMKNFQAL
TNRARKDVAIGSIQVDVCMYSFDLMYLNGEPLLDRPFRERRELLRSMFIEVPHQFTWVKS
LDATSQDSDAVLDFFKSATDIKCEGIMVKILDNLTEVPCQGGEVDAPVDEMEEPQTPSKR
KAPGKIAENDTKKKTRRKPLLATYEPDKRLDSWLKVKKDYNASFDTIDMIPVAGWHGQGR
KAKWWSPILLAVRNEDSGSFEVVCKCISGFTDTFYKANREFYDDGSGGSGVIQNIRSSKP
AFIEYSGPEPDVWFEPQEVWEMAFADVTLSPTYTAAIGLVSEERGLSLRFPRFLKKRDDK
GLDEASTNEFLASLFRKQESKAIPAAVDAAEDE
NT seq 2442 nt NT seq  +upstreamnt  +downstreamnt
atgccgagtccaacgaagaagcggaagctcaacaaggatgcaagtggcccaacatcgcgt
ggtcttgagtatttcttctcgaaacagaagcaaggcgatgcatcagctgcttctacacag
ccacaaccgaagcaggatgttggcgaggctcccagaagtgaacaggaattcaccgatgag
gagctagcccggaagctccaagctgaatgggatagcgaggttcaaaataccgaaagtctc
tcgacagagtctcagctagtcccgcgttgtagcgcaagcccagctctcgatcccagttct
accggttcagctcaagtcgcgatatcagccgccacacctgtggaagaacccaaacttgca
agcacagcaccgaagactctgtcactctcatctgtagccgtagctggagactcactttct
tcaaccatacccctggatcagagccctctggttttcgacccttcggagtattcatcgcac
ctaaaagatcactgggcttccgaaggtggcgatgcctcatatgccctgctcacgaggtgt
ttcatactggtcaacagcacgcaatcaaggatcaagatagtggacactctcgtgaactgc
atcagacttatcatacagacagatcctgaaagtctcctccccgctgtttggctagcgacg
aacgccatttcgccgccctatatttccttggaactgggtctcggtgggtcagccatatcc
aaagctctgaagcaagtttgtgggctcaatggaccgtcgctgaagaatctctacgacaag
tacggcgatgcgggagatgtggcttttgaagccaagaagaaacagagcttcacgcttcgg
aagccgaagccgctgaccatcaaggctgtctaccaatctctggtcaagattgcgaacacc
caagcgcttgcccgggcgttttctctgacttccccgcctggtgcagatttcgctgtccgc
gacaggggcagcctcgccaagttaaaaaaggaggagcttgccgaggtttgggcaaaagcg
gaggagattgtaaaagcctgcttcgcgaaaagaccaaactacaacgacctcgtacccatt
cttctcgagattggtgtttgtgatgagctgctcatccgctgtgggctcaccctgcacatt
cccctacgacccatgctcggtagcataacgcgagatctgacggagatgcttaccaagctc
caaggccgggatttcgcctgcgagtataagtatgacggccagcgtgcccagattcactgc
gacgccaaaggaaaagtaagcatcttctcgaggcatcttgagctgatgacggacaagtac
cccgacctggttgccctcatgccgcagattcggggtgaaggtgttgacagctttgtgatg
gagggagaggtcgtggcaatcgaccgacagacgggagatatgaagaactttcaagctctg
accaaccgcgcgagaaaagatgtcgcaatcgggagtattcaagtcgatgtctgtatgtac
tccttcgacctgatgtacctgaatggggagccactactcgacaggcctttccgcgaaagg
agagagctccttcggtcgatgttcatcgaagtcccccaccagtttacatgggtcaagagc
ctagacgctacttcgcaggattccgacgcagtgctcgacttcttcaaatctgctaccgac
atcaaatgcgagggtatcatggttaagatcctggacaatttgaccgaagtaccttgccaa
gggggcgaagttgacgctcctgtggatgagatggaggaaccgcagacaccttcgaaacgt
aaggctccggggaagattgctgagaatgacacgaaaaagaaaacgcgacgtaaaccactg
ctggcaacctatgagcccgacaagcgactcgactcatggcttaaggtcaagaaagattac
aacgcaagtttcgacactattgacatgattcctgtggctggttggcatggccaagggcgc
aaggccaaatggtggtcgccgattttgcttgctgtccgcaacgaagacagtggctcattc
gaggttgtgtgcaaatgcatatcaggctttaccgataccttttacaaagctaatcgggag
ttttatgacgacggtagcggaggaagcggcgtgatacaaaacattcgttcctcgaagcct
gcatttattgagtactccggaccggaaccggacgtctggtttgagccgcaggaggtttgg
gagatggcgttcgcggatgtcacgctcagcccgacatacacagcagcaataggcttggtg
agcgaagagcggggcttgagcttgcgatttccgaggttcttgaagaaacgggatgacaaa
ggcttggatgaggcgagtacaaatgagtttctggcctcgctcttcaggaaacaagaatcg
aaggcgatacctgcggcggtagatgcggcagaggatgaatga

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