Verticillium dahliae: VDAG_06643
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Entry
VDAG_06643 CDS
T03450
Name
(RefSeq) WD repeat-containing protein
KO
K14962
COMPASS component SWD2
Organism
vda
Verticillium dahliae
Pathway
vda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VDAG_06643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_06643
03036 Chromosome and associated proteins [BR:
vda03036
]
VDAG_06643
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
VDAG_06643
Chromosome and associated proteins [BR:
vda03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
VDAG_06643
COMPASS/SET1 complex (yeast)
VDAG_06643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
20708106
NCBI-ProteinID:
XP_009657642
UniProt:
G2X911
LinkDB
All DBs
Position
8
AA seq
382 aa
AA seq
DB search
MASTPMDLDRDAASTNGNSLNITRNTPSSTSRVSDVILSFRPTKLFRREDIKDGRSTPHI
LSLDFDDPGELLMTSESDETIQIYNVREGRHEKSLLSKKYGVKLAKFTHTTSSIIYASTK
QNDQIRYLATHDNSFIRYFEGHEKAVTCLAVHPGTDNFISCAKDDTVRLWDIKSKQWCGQ
LFLNQPTLAAYDPSGNVFGVASPASGSVLLYDCRNFDKAPFGVFDVVDAVRSVDKDFSMK
GWTKLEFSNDGKHILLGTRGNGHFLLDAFDGHLKAYLRKPEGGTRRRAAGESAEGFGADE
GSSPESSGDCSFTVDGRYVLSGSKKDVLVWDTQGTPSDEQVLDPLTVLEDKREAAVLAWN
PRYNFFATADQEVLFWVPDPHA
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacgccgatggacttggaccgcgacgccgcctcgacaaacggcaactcatta
aacatcacgcgaaacacgcccagtagtacatctcgcgtcagcgacgtcatcttaagcttc
cggccgacaaagctgttccgcagagaagacatcaaagatggccgttccactcctcacatc
ttatcccttgactttgacgaccctggcgagcttctcatgacctcggaaagcgacgaaacg
atccagatctacaatgttcgagagggcaggcacgagaagagcctgttgagcaagaaatat
ggcgtcaagctagccaagttcacccatacaacgtccagcatcatctacgccagtactaag
cagaatgaccagatccgatacctcgcgacccacgacaactccttcatccgttacttcgag
ggccatgagaaagccgtgacgtgcctagcagtacaccctggcacggacaacttcatttcc
tgcgccaaggacgacacagtccgcctctgggatatcaagtcaaagcagtggtgtggtcag
ctctttctcaaccaacctactctggccgcctatgacccctcgggcaatgtctttggcgtg
gcttcgccagccagtggctcggtcctcctatatgactgccgtaactttgacaaggcgccc
tttggagtttttgatgtcgtcgatgctgtccgctctgtcgacaaggacttctccatgaaa
ggctggacgaaacttgagttttcgaacgacggaaaacacatccttctaggaacaagaggt
aacgggcacttcttgctagatgcatttgatggtcacctaaaagcatatctgcgcaagccc
gagggaggaacgaggcgacgggcagcgggagagtcggccgaaggctttggcgcagacgaa
ggatctagcccggaaagcagcggggactgctcattcacagtggacggccggtacgtgctc
agcgggtcgaagaaggatgtcttggtatgggacacgcagggtacgccgtccgatgagcag
gttctagatcctttaacagttctggaggacaagcgcgaggcggccgtgcttgcttggaat
ccccggtacaacttcttcgccacagcagaccaggaggttttgttctgggtgccggacccc
catgcttga
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