Vibrio diabolicus: AL552_09300
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Entry
AL552_09300 CDS
T05332
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AL552_09300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vdb03400
]
AL552_09300
Enzymes [BR:
vdb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AL552_09300
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AL552_09300
DNA repair and recombination proteins [BR:
vdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AL552_09300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
AVF93989
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All DBs
Position
1:82272..83081
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AA seq
269 aa
AA seq
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MPELPEVEVSRMGISPHMVGQTIQSFTFRTPKLRWDIPIELKKLEGQVIRTISRRAKYLL
IETNTGTAIVHLGMSGSLRVLDADFPPAKHDHVDLKLSSGKILRYNDPRRFGAWLWCAPG
ESHAVLANMGPEPLTEEFNAEYVAEKAKNKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
IHPSRPAGKLTSQEWGLLVENIKMTLEIAITQGGTTLKDFAQADGKPGYFAQELLVYGKA
GEPCPECGERLQELKIGQRNTFFCGECQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgccagaagtagaagtcagtcgtatggggattagcccccacatggttgga
caaacgatccagtcgtttacttttcgaacgcctaaattgcgctgggatattcctatagag
cttaaaaaattggaagggcaggtgatccgtacgattagccgtcgtgcgaaatacttactg
atcgagacaaacacaggtacagccattgttcacttaggcatgtctgggtctttacgtgtc
ctagatgccgactttccgccagcaaagcacgatcatgtggatctcaaactaagcagtgga
aaaatactacgttataacgatccgcgtcgttttggggcatggttgtggtgtgctcctggc
gagtcacatgctgtactagcaaacatggggcctgagcctttaactgaagagttcaacgcg
gaatatgtagcggagaaagctaaaaataagcgtgttgccgtcaagcagttcatcatggac
aacaaagtcgtggttggtgtcgggaacatctacgcgaatgaatcgttgtttaaatctcga
attcacccttcaaggcccgcaggtaaactgacttctcaagagtggggattacttgttgaa
aatatcaaaatgacacttgagattgccattacgcaaggtgggactacgctgaaagacttt
gcgcaagctgatggaaagccgggttactttgcacaagagttattagtttacggaaaagcc
ggagagccatgcccagaatgcggcgaacgacttcaggagctaaaaatagggcagcgtaat
accttcttttgtggtgagtgtcagaagtga
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