Vibrio sp. EJY3: VEJY3_03635
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Entry
VEJY3_03635 CDS
T01683
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vej
Vibrio sp. EJY3
Pathway
vej03030
DNA replication
vej03410
Base excision repair
vej03420
Nucleotide excision repair
vej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VEJY3_03635 (ligA)
03410 Base excision repair
VEJY3_03635 (ligA)
03420 Nucleotide excision repair
VEJY3_03635 (ligA)
03430 Mismatch repair
VEJY3_03635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vej03032
]
VEJY3_03635 (ligA)
03400 DNA repair and recombination proteins [BR:
vej03400
]
VEJY3_03635 (ligA)
Enzymes [BR:
vej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VEJY3_03635 (ligA)
DNA replication proteins [BR:
vej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VEJY3_03635 (ligA)
DNA repair and recombination proteins [BR:
vej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VEJY3_03635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VEJY3_03635 (ligA)
MMR (mismatch excision repair)
DNA ligase
VEJY3_03635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VEJY3_03635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
DUF4874
Motif
Other DBs
NCBI-ProteinID:
AEX21225
LinkDB
All DBs
Position
1:822168..824180
Genome browser
AA seq
670 aa
AA seq
DB search
MSESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAQHPDLVTVDSPS
QRVGGKPLSEFSEVKHEVPMLSLDNAFDDSELDSFHKRAQDRVGNQSVKQYCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTINAIPLKLRGNDWPERLEVRGEVFMPKA
GFEKLNELARQKGDKVFVNPRNAAAGSLRQLDSRVTASRPLSFYAYSVGVVQGAELASSH
YERFLQIKSWGLPMCPETKRVDSLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAIQER
LGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLQVKIGDQVVIRRAGDVIPQVVSVIRERRPENAREIVFPSLCPVCDSHVERIE
GEAVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSA
GILTVLERMGPKSAQNIVNALDKSKLTTLPRFLYSLGIREVGEATAANLAQHFKTLEAIQ
VATEEQLIEVQDIGVIVAKHITTFFGEEQNQAVVKDLLEQGIHWPEISAPEQGVELPLEG
KTVVLTGTLSQLGRSEAKEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIK
TEQDLLDLMN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatcagtacttcaacgactagaagaattaaaagagtcgttgcattaccacgcc
gttcgttactacgtggaagataacccagagattccggatgctgaatatgatcgactcatg
cgtgaattgctggatattgaagctcaacacccagacctagttacagtagattcgcctagc
cagcgtgttggtggaaaacctttatctgaatttagcgaagtgaagcatgaagttccgatg
ttgtcattagacaatgcttttgacgacagcgagctggatagcttccacaaacgagcacaa
gacagggttggcaatcaaagtgttaaacaatactgttgtgagccaaaactggatggctta
gcagtaagcctattgtacgaaaacggtgttcttgtccaggccgcgacgcgtggtgacggt
acaaccggtgaaaacattactgaaaacgttcgtaccatcaacgccattcctctcaaatta
agaggaaatgattggcctgagcgtcttgaagttcgtggtgaagtttttatgcctaaggcg
ggttttgaaaaactcaacgaactggctcgtcaaaagggagacaaagtttttgttaaccct
cgtaatgccgcagctggtagcttacgtcagttagattcacgtgttaccgcttcgcgtccg
cttagtttctatgcctacagtgtgggtgttgttcagggagcggaattagcgtctagtcac
tatgaacgctttctgcaaattaagtcatgggggctgccaatgtgtcctgagactaagcga
gtagatagcctggcggatgtcaaagcgtactaccaagatattttacagcgacgtgatgct
ttgccatatgagattgatggtgtcgttataaaaatcgacgatattgcgatccaagaaaga
ctgggcttcgttgctagagctcctcgctgggctattgcttataagttcccggcgcaagaa
gaaatcaccacattgaatgatgtggaatttcaggtagggcgtactggtgcgattacgcca
gtcgctaaactggaacctgtttttgtcggcggtgtgacggtaagtaatgctactctgcat
aacgctgatgaaattgaacgtcttcaagtaaaaatcggtgaccaagttgtgatccgccgt
gctggtgacgtgattccccaagttgtttcagtgatccgcgagcgtcgtccagaaaacgcg
cgcgagattgtgtttccatcgctctgccctgtttgcgattcgcatgtcgaacgaattgag
ggagaggctgtgacccgttgtacgggtggtttggtttgccaggcgcagcgtaaacaagcg
ctcaagcatttcgtgtcgcgtaaagcgttagatgtcgatggtcttggcgataaagtgata
gaacagcttgttgatcgagaaatggtcgaaactccagcggatctgtttaagttgtctgca
ggcattttgacggttttagagcgtatggggccaaaatcagcgcagaatattgtgaatgcg
ttagacaagtcgaagttaaccacattacctcgctttttatactcactaggcattcgagaa
gtcggcgaagcgacagccgctaacttagcgcagcatttcaaaacgctagaagcgattcag
gttgcgacagaagaacagttgattgaagttcaggacatcggcgtcattgttgctaagcat
atcaccaccttctttggtgaagagcaaaaccaagcagtagtgaaagacttactagagcaa
ggtattcactggccagaaattagtgctcctgaacaaggtgttgaactgccgttagaaggc
aaaacggttgtactaactggtacgctttctcaactagggcgatccgaagcaaaagaggca
ctacaggcgctgggtgctaaagttaccggcagtgtttcgaagaaaacggatattttattc
gcaggtgaaaatgcgggttctaaattagcaaaagcgcaagacttgggaattgaaattaaa
accgaacaagacttactcgacttaatgaattaa
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integrated database retrieval system
