Vollenhovia emeryi: 105562065
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Entry
105562065 CDS
T06016
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
vem
Vollenhovia emeryi
Pathway
vem04512
ECM-receptor interaction
vem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105562065
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105562065
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vem04147
]
105562065
00536 Glycosaminoglycan binding proteins [BR:
vem00536
]
105562065
Exosome [BR:
vem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105562065
Glycosaminoglycan binding proteins [BR:
vem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105562065
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105562065
NCBI-ProteinID:
XP_011867962
LinkDB
All DBs
Position
Unknown
AA seq
1986 aa
AA seq
DB search
MTRLGLRFVASAVFLAGIVSGQYNHTSWNPPPVVPLNERGDIGGPVSAGDDDDDSPPGFK
DEDRDRFREFITDNEGYEDPERWNGSFTAGHYSPDDRTRQWSYYRNRSDPHGQVPSGRSP
YDRGPQDYDRYPESGGASGYGIDENRPGHPDGRGDYEAHSGAGENDRGGGSHNYGQGGSY
GGSYGGSYGAGGADSYGRGSGNVYGGGRGSGDPYGGGRGSGHVYGGGRGGDDAYGGSRGR
GHGGYGAAGDDENYPSNYQVVPMPGAPRNCTGSGCCVPKCFAEKGSRGPPGILGPQGPKG
QRGFPGAEGLLGPKGEKGDPGPQGPHGAKGDRGKMGMPGFPGINGVPGVQGSPGSPGLPG
RDGCNGTDGERGRDGVPGEPGPRGFRGGPGPKGEKGQPAYAGAFPVGQKGEPGNDGVRGP
PGPPGFQGERGPSGVKGERGPYGTSGLPGPKGEKGNMGLGFEGLKGDKGQKGESGPPGST
APIMPFQGASDVTGPRGEPGLKGDRGEMGPEGQKGEPGFIGDHGIPGGSGHKGEKGLPGA
PGIRGRDGFSGPPGPPGRKGDRGIDGLEGLSGRSGKKGESGRDGPMGVPGLRGPPGPPGG
GKGRPGPPGPKGPRGFPGPTGSRGTDGFPGDPGPRGPIGLQGGPGLSGIPGPEGLPGEKG
GKGEPGLTGFPGGPGPRGFDGPPGPAGPRGLPGDKGFSIMGPKGMDGSPGFDGEKGQKGE
RGYAGVRGRPGDSLDGIPGSPGAPGEAGEPGAPGRDGIPGLSGTPGDKGDIGGRCIDCLP
GFRGAKGDRGLDGIPGLTGPRGPPGERGFPGEPGVDGLPGAIGPPGLPGKDGIPGAPGPQ
GESGTPATVTWNMLKLEKGDKGARGESGRQGPPGPEGPVGEKGRPGFEGFPGLKGTPGDR
GFPGQDGVPGRPGTPGRRGDKGISIKGEPGEGGRPGSPGQKGEPGFYGIKGEPGECPPLD
LMKGFKGDRGLTGEKGEPGPPGRDGISGDKGLQGFSGPPGPVGPIGAPGPVGARGLPGPR
GDKGNMGPMGFPGESGREGPRGFPGAPAPKGDKGEPGISVKGSPGLTGPPGERGEKGLPG
PPGKEGLPGYQGLPGFVGEKGDVGAPGINGLPGAPGGKGDTGPIGPPGPPGVAGIPGADG
GKGEPGLLGEPGRSGLPGFPGSKGDRGEPGIDGPKGYPGRRGLPGTPGRPGIDGVSGLKG
EHGDKGSPGFPGLPGMEGKPGRPGISGLKGDQGLPGAPGLPGIVGYEGVKGDTGLPGPTG
RKGEPGQVSEKGQKGEPGMPGIRGPQGPPGRDGIDGSKGEAGRPGHGRDGLPGLKGDAGV
PGRDGAPGFQGQKGDTGVRGFPGIKGDYGPPGIHGEPGPPGIDGLPGEVGAIGSPGAPGF
PGLDGELGSPGRPGLDGVKGDRGQPGLVGLPGIIGALGEKGDRGPPGPTIQIKGEKGEPG
IPGFSGEKGEKGDQGLIGIAGYDGEKGDRGSGGTEGSPGPHGAPGLKGEQGPPGIPGAPG
VTIKGEKGLPGLMGKHGRDGFSGRPGEKGEPGLPGLPGPKGDIGPYGPVGPQGEKGDQGV
LGITGAPGRDGTPGLEGVPGLPGERGPKGDQGPPGLFGAPGLKGETGHPGANGLDGPQGE
KGERGWDGVNGLPGPLGEKGDRGYPGPVGLMGTVGYAGHKGEKGEDCLEPPMGPKGDRGY
PGPAGPSGPPGEKGLSGPPGFPGLDGIKGAQGFIGPAGPPGLPGLPGPVGASGLPGLQGP
VGAPGLTGEPGAPCETTPDYLTGILLVKHSQSQSTPICEPGHIRLWEGYSLLYTDGDERA
HSQDLGYAGSCVRKFSTIPFLFCDVNNVCHYASRNDRSYWLSTNSPIPMMPVEETAIEEY
ISRCVVCEVPANVIAVHSQAISIPECPAGWTGLWIGYSFVMHTGAGSQGGGQSLSSPGSC
LEDFRATPFIECNGAKGHCHYYSNQYSFWMVTIEENQQFRSPEKQTLKAGNLRSRISRCQ
VCIKNT
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcgtcgcatccgcagttttcctggccgggattgttagt
gggcaatataatcacacatcatggaatccaccgccggtcgtgccactgaacgaacgaggt
gatatcggagggcctgtaagcgctggcgatgacgacgacgacagtccgcccggattcaaa
gatgaagacagggatagatttagagagtttatcacggacaacgaaggatacgaggatccg
gaaaggtggaacggcagtttcacggctggccattacagtcccgacgacaggactcggcag
tggagctactatagaaacaggagcgatcctcacggtcaagtgccctcgggccgatctcct
tacgatcgaggaccgcaggactacgaccggtatcctgaaagtggcggcgcgtcgggatac
ggaattgacgaaaatcgaccaggtcatcccgatggtcgcggcgattacgaggcacacagc
ggcgccggcgaaaacgaccgaggaggaggatctcataattacggccaaggaggttcttat
ggcggtagttacggcggaagttacggcgcgggaggcgcggattcctatggccgtggaagc
ggaaatgtttatggtggcggtcgtggaagcggagacccttacggtggcggccgcggaagt
gggcacgtttacggtggcggtcgtggaggcgacgatgcttacggtggcagtcgcgggcgc
ggtcatggtggttacggtgccgctggagacgacgagaattatccgagcaattaccaggtg
gtaccgatgcccggggcaccgcgaaactgcactggatcgggatgctgcgtacccaagtgt
ttcgccgagaagggatcgcggggaccaccgggaatactcggaccgcaaggtcctaaggga
cagcggggatttccaggagcggaaggtcttctaggacccaaaggtgagaagggagacccc
ggcccacaaggtccgcacggtgcgaaaggtgacagaggaaaaatgggtatgcctggtttt
cctggtataaacggtgtgcctggagtacaaggatctccgggttctccaggcttgcccggt
cgtgacggttgcaacggaacggacggtgaacgtggacgtgacggcgtacccggagaacca
ggacctcgaggttttcgaggtgggcctgggcctaaaggagaaaagggccagccagcgtat
gccggcgctttcccggtgggtcaaaagggtgaacctggtaacgacggtgtcagagggcct
cccggccctcccggttttcagggagagcgtggcccgtctggcgtgaagggtgaacgaggt
ccctacggcacctcgggcttaccgggtccgaaaggagaaaaaggaaacatgggtctcgga
ttcgaaggattaaagggtgataaaggtcagaagggtgaatcgggacctccgggctcgacc
gcgcccattatgccattccaaggagcctcggacgtaacgggtccgcgcggtgaaccaggc
ctaaaaggagataggggtgaaatgggaccggaaggacaaaaaggagaaccaggattcata
ggcgatcatggtatacccggtggatcaggacacaaaggagagaaaggtcttccaggagct
ccaggcattcgtggtagagatggtttctctgggcctcctggacctcctggacgaaaaggt
gatcgaggtattgacggattggaaggcctttctgggcgatccggcaagaaaggagaatcc
ggtcgagacggaccgatgggagttccaggtttacgaggacctcctggaccaccggggggt
ggtaaaggaagaccgggaccgccaggcccgaaaggaccacgtggttttccaggacccacc
gggtcacgaggaacagacggttttccaggagacccaggaccaagaggccccattggttta
caaggaggtcccggattgtctggaattccaggcccagaaggtttgccaggggaaaaaggt
ggaaaaggtgaacccggtttgaccggattccctggaggtccaggaccacgtggatttgat
ggaccaccaggaccggctggaccgagagggctgccaggagataaaggattctcaataatg
ggaccgaaaggcatggatggatcgcctggcttcgatggagagaaaggacaaaagggcgaa
cgaggttacgcgggtgtccgaggtcgaccgggagactctctagacggtatcccaggatca
ccgggtgcacccggtgaggccggggaacccggagcgccaggaagagacggcataccaggc
ctttctgggacgcctggagataaaggagatatcggcggtcgctgtatagattgtttacct
ggttttcgaggcgccaaaggtgatcgtggtttggatggtatacccggacttaccggaccc
cgaggaccacccggagaacgcggtttcccgggtgaacctggagtggacggtttgccaggc
gcaatcggacctccgggactgccaggaaaagatggtatacccggtgctccaggacctcaa
ggagaatccggaaccccggcaacagtgacatggaacatgctcaaactggaaaaaggtgac
aaaggagcgcgtggagagtctggtcgacaaggtccgccgggaccggaaggaccggtggga
gagaagggtagacctggattcgaaggtttcccagggctcaaaggaacgccaggagatcgc
ggcttcccagggcaagatggcgttcccggaagacctggtacacctggacgcaggggagac
aaagggataagtataaaaggtgaaccgggagaaggaggtcgtccgggatctccaggacag
aaaggagaacctggattttacggaattaagggtgaacctggtgaatgtccgccacttgac
ctcatgaaaggcttcaaaggtgatcgaggcctgacaggtgagaagggagaacctggacca
cctggcagggatggaatatcgggtgataaaggattgcaaggcttctcgggtccacccggt
ccagttggtccaatcggtgctcctggacctgttggtgcaagaggtttacctggcccgcgc
ggagacaagggtaacatgggtcctatgggtttcccaggagagtctggtcgcgaaggacct
agaggcttcccaggtgctccggctccgaagggtgataagggagaaccgggaatatcggtt
aaaggtagtcctggtttaacaggacctccaggtgagagaggagagaaaggtcttcccggg
ccaccagggaaagaaggtctgcccggttatcagggattaccaggctttgttggcgagaag
ggagacgttggcgcaccgggaataaatggtttgccaggggcacctggtgggaaaggagac
acaggtccaattggtccacctggtcctccaggtgttgctggtatcccaggagcggatgga
ggcaaaggcgagccaggattactaggagaaccaggtagatcgggcctcccaggtttcccg
ggatcgaaaggtgatcgcggcgaaccaggtattgatggaccgaaaggataccccggcaga
cgaggattacctggaactccaggtagacctggaatcgatggcgtatcaggtctaaaggga
gaacacggtgacaaaggctcaccgggattccctggattgccaggtatggaaggaaagccc
ggtcgtcctggtatatccgggctaaaaggtgaccaaggactacctggcgcgcctggttta
ccaggaatcgtcggttatgaaggagttaagggcgacactggactgccgggtccaacggga
aggaaaggagagccagggcaagtctcggaaaaaggacagaaaggcgagccaggaatgcct
ggaatacggggtcctcagggtccgccgggacgagacggtattgatggatcgaagggcgaa
gctggcagaccaggccatgggcgtgacggattacctggattaaagggcgacgcgggtgta
ccgggtcgggacggagcgccaggattccaaggccaaaagggtgataccggtgtacgagga
ttccccggaataaaaggcgactacggtccaccgggtatacacggagaaccgggtccgccg
ggcatagatggacttcctggagaagttggtgcaatcgggtcgcccggagcacctggtttc
ccgggacttgatggcgaacttggttctcctggtcgacctggactcgatggtgttaaagga
gatcgcggtcagccaggactcgtcggattgcctggaatcattggagcactaggagaaaaa
ggagatcgtggtccgccgggacctacgatccaaatcaagggtgagaaaggcgaaccaggt
atacctggattttctggagaaaagggagagaaaggagatcaaggtctgataggtatcgct
ggttatgatggcgaaaagggtgacagaggctcaggtggaaccgaaggatctcctggacct
cacggtgctccgggacttaagggcgaacaaggacctcctggtattcccggagctcctgga
gttacaataaagggtgaaaaaggtttgccaggtctaatgggtaagcacggcagggacgga
ttttcaggacgacccggtgagaagggcgaaccaggattacctggtttgcctggaccaaag
ggagacattggtccttacggaccagttggaccgcaaggtgagaaaggtgatcaaggagta
ctgggtataactggagcaccaggacgtgacggaaccccaggtctcgaaggtgtaccagga
ttacctggtgagagaggtccgaagggtgaccaaggaccgcctggattatttggtgcccca
ggattaaagggagaaaccggtcatccaggagcaaatggattagacggaccccaaggagaa
aagggtgaaagaggttgggacggtgtaaatggtctacctggaccacttggcgagaagggt
gatagaggatatcctggtccagtcggattaatgggtaccgttggctacgcaggtcataaa
ggagaaaagggtgaagattgtctcgagccgccaatgggacctaaaggagatcgcggatat
cctggcccggctggaccgtctggtccaccaggagagaaaggactgtcgggtccgcccggt
ttccccggcttagacggtattaaaggcgcccaaggtttcatcggtccagcaggacctcct
gggctaccaggattgcccggacctgtcggcgcgtccggcctaccgggtcttcagggtcct
gtcggtgcgccaggactcactggcgagcccggtgcgccctgcgaaacgacacctgattat
ctcaccggtattcttctggtcaagcacagccaaagtcaaagcaccccgatttgcgagccg
ggtcacatcagactctgggagggatacagtttgctctacaccgatggcgacgagagagcg
cactctcaagacttaggttatgccggctcgtgtgtaagaaaattctccacgatacccttc
ctgttctgcgacgtcaacaacgtctgccattacgctagtcgcaatgatcggtcttactgg
ctgtctaccaatagcccaattcccatgatgccagtcgaggagacggcaatagaagaatat
atctccaggtgcgtggtgtgcgaagttccggctaatgtgatagcggtacacagtcaagcg
ataagcattccagaatgtccagcgggatggaccggtctttggatcggttatagttttgta
atgcacaccggcgcaggctcccaaggcggcggccagtccctgtcgagtcccggttcctgc
ctggaggacttccgcgccacacctttcatcgagtgcaacggcgccaaaggacactgccat
tactattctaatcagtacagcttctggatggtgaccatagaggaaaaccagcagttcagg
agccccgagaaacagaccttaaaggcgggtaatcttagatcccgaataagtcgctgccaa
gtttgtataaagaatacgtaa
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