Vitreoscilla filiformis: VITFI_CDS2396
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Entry
VITFI_CDS2396 CDS
T04960
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03030
DNA replication
vff03430
Mismatch repair
vff03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VITFI_CDS2396
03430 Mismatch repair
VITFI_CDS2396
03440 Homologous recombination
VITFI_CDS2396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vff03032
]
VITFI_CDS2396
03400 DNA repair and recombination proteins [BR:
vff03400
]
VITFI_CDS2396
Enzymes [BR:
vff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VITFI_CDS2396
DNA replication proteins [BR:
vff03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VITFI_CDS2396
DNA repair and recombination proteins [BR:
vff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VITFI_CDS2396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ASM78174
UniProt:
A0A221KGL2
LinkDB
All DBs
Position
2524064..2527633
Genome browser
AA seq
1189 aa
AA seq
DB search
MPFVHLRTHTEYSVVDGTLRIDDAVKAAKKDGQPALAITDLANLFGAVKFYKACRGKGVK
PVIGTEVWLEPHDATDKFVPRVLLLVQNITGYHNLSELLARAWTSNVQRNQAWVKWEWLR
ELGEGLIVLSGFEFGPLAPALQAGDVARARSVATQLAELFPRRFYIEVQRGGLHHPEPLV
RASVQLAAQMQLPVVATHPVQFLEPDDFEAHEARVCVAEGETLGNPKRVKRFGREQYFKN
QAQMEALFADLPSAITNTLKIAERCSLTLVLGKPQLPNFPTPLLADGTPMPIDQFFREES
HKGLDYRLRQLFPDEAKRKAERPRYVERLEFELNTILKMGFPGYFLIVSDFITWAKNNGC
PVGPGRGSGAGSLVAYALLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQANRDRVID
YVKEKYGRPAVSQIATFGTMAAKAALRDIGRVLGMGFGHVDSIAKLIPAPPGKTVTLAPV
PAEPEKGLIYARQEAPELEEREKNEEEVAELLRLATRVEGMVRNIGMHAGGVLIAPGKIT
DFCPLYQQPGSDSAVSQFDKDDVEAIGLVKFDFLGLATLTILELAKEFIVTRYPDQKNFA
FENLPLDDKAVYKLFSDGLTEAVFQFESRGMQGMLRDAKPSRLEDLIALNALYRPGPMDL
IPSFVARKHGREPVEYPHPLVEWVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAM
GKKKPEEMAEHRTIFRKGAAEKGISEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTG
WLKVHYTAEFFAANMTNELSDTDKLKVLLGDAVKNFKIEFEPPSVNRGVYRFEPLPGAEG
RRKIRYGLGAIKGTGQGAIEAIVANRESEGPFTSLFNFCQRVDKGRVNKRVVEALIKAGA
FDELHPDRGATLASVGLAFEWAQAQAANANQGGLFDAFGDDSHGSHTQEPPLMSVPAQSV
REKLTLEKAALGFYLSGHLFDQDEPEVRKFCKRRIADLVDARELQIVAGIVGEMRVVNGQ
RGRVGIFKLDDGSEPIETVVNEEQLDANKERLVEDALVIVQGKVQNDRFSGGLRLNATQV
WDLAAARARFGRCWSVMLPAGTLPTATQARQAVASLAQLLHQHPPRVEATELGDVAQGLT
VRLQLHRAGAVAELELGTQGRFWPSEAALSAWRTWAPEGATMGVVYEGT
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcgttcacctgcgcacccacaccgaatactccgtcgttgacggcacgctccgc
atcgacgatgccgttaaagcagcgaaaaaagatggccagcccgcgctcgccatcaccgat
ttggccaacctgtttggcgccgttaagttctacaaagcgtgccggggcaagggcgtcaag
cccgtcatcggcaccgaagtctggctggagccgcacgacgcgaccgataaattcgtcccc
cgcgtgctgctgctggtgcaaaacatcaccggttaccacaacctgagtgaactgctggcc
cgcgcctggacaagcaacgtgcagcgcaaccaagcctgggtgaagtgggagtggctgcgc
gaactgggcgaggggctgatcgtgctgtcgggcttcgagttcgggccgctggcgccggcg
ctgcaagccggcgatgtggcccgcgcccgcagcgtggccacgcaactggccgagctgttc
ccgcgccgtttctacattgaggtgcagcgcgggggcctgcaccacccagagccactggtg
cgcgccagcgtgcaattggccgcccagatgcaactgcccgtcgtggccacccatccggtg
cagtttttggagccggatgatttcgaagcgcacgaagcccgcgtctgcgtggccgaaggt
gaaacgctgggcaaccccaagcgcgtgaagcgatttgggcgcgagcagtatttcaagaac
caagcgcagatggaggcgctgttcgccgacctgcccagcgccatcaccaacacgctcaaa
atcgccgagcggtgcagcctgacgctggtgctgggcaagccgcaactgcccaatttcccc
acgccgctgctggccgatggcacgcccatgcccatcgaccagtttttccgcgaggaaagc
cacaaggggctggactaccgcctgcgccagcttttccccgatgaggccaagcgcaaggcc
gagcgcccgcgttacgtcgagcgcctggagttcgaactgaacaccatcttgaagatgggt
tttccgggctacttcctcatcgtgtcggacttcatcacctgggcgaagaacaacggctgc
ccggtggggccgggccggggctcgggcgcgggttcgctggtggcgtatgcgctgctcatc
accgacctggatccgctgcaatacaacctgctgttcgagcgctttttgaaccccgagcgc
gtgtcgatgcccgactttgacatcgacttctgccaagccaaccgcgaccgggtgatcgac
tatgtgaaagaaaagtatggccgcccagcggtgagccagattgccaccttcggcaccatg
gcggccaaggcggcgctgcgcgacattggccgcgtgctgggcatgggctttggccatgtg
gattcgattgccaagctgattcccgccccgcctggcaaaaccgtgacgctggcgcccgtg
cccgccgagccggaaaaaggcttgatttatgcccgccaagaagccccggagctggaagaa
cgcgaaaagaacgaggaagaagtcgccgagctgctgcgcctggccacgcgggtggaaggc
atggtgcgcaacatcggcatgcacgcggggggcgtgctgatcgcgccgggcaagatcacc
gatttctgcccgctctaccaacagcccggctcagactccgccgtcagccagtttgacaag
gacgacgtcgaagccatcggcctggtgaagttcgacttcttgggtctggccacgctcacc
atcttggagctggccaaagagttcatcgtcacgcgctacccggatcaaaagaacttcgcc
tttgagaacctgccgctggatgacaaggcggtttacaagctgttctccgacgggctgacg
gaagccgtgttccagtttgaatcacgcggcatgcaaggcatgttgcgcgacgccaaaccg
agccggctggaagacctgatcgccctgaacgcgctttaccgccccggcccgatggatctg
attccgagctttgtggcgcgtaaacacgggcgcgagccggtggagtacccgcatccgctg
gtcgaatgggtgctggccgaaacctacgggatcatggtctaccaggaacaggtgatgcag
accgcccaggtgctgggcggctacagcctgggcggtgccgacatgctgcgccgcgccatg
ggcaagaaaaagcccgaggagatggccgagcaccgcaccatcttccgcaagggtgcagcc
gaaaaaggcatcagcgaagagaaggccgacgaggtcttcgacttgatggagaagttcgcg
ggctacggcttcaacaagtcgcacgcggcggcctattcactgctggcgtaccacacgggc
tggctcaaggtgcattacacggccgagttcttcgcggccaacatgaccaacgaactgagc
gacaccgacaaactgaaggtgctgctgggcgatgcggtcaaaaacttcaagatcgagttc
gagccgcccagcgtcaaccggggcgtgtaccggtttgagccgctgccgggtgcggaaggg
cgacgcaaaattcgctacgggctgggcgccatcaagggcacgggccaaggtgccattgaa
gccatcgtcgccaaccgcgaatccgaggggccgttcaccagcttgttcaacttctgccag
cgcgtggacaagggccgcgtgaacaagcgcgtggtggaagcgctcatcaaagccggcgcg
tttgacgagctgcacccggatcgtggtgccacgctggccagcgtcggcttggcattcgag
tgggcgcaggcgcaagcggccaacgccaaccaaggcgggttgttcgatgctttcggcgac
gacagccacggctcgcacacccaagaaccaccgctgatgagcgtgccggcacaaagtgtg
cgcgaaaaactcacgctggaaaaagcggcgctgggcttctacctctccggccatttgttc
gaccaagacgagcccgaggtgcgcaaattctgcaaacgccgcatcgcggatttggtggat
gcgcgggagctgcaaatcgtggcgggcatcgtcggggagatgcgggtggtgaacggccaa
cgtggccgggtcggcatcttcaaattggacgatggcagcgagcccatcgaaaccgtggtc
aacgaggagcagctcgacgccaacaaagaacggttggtggaggatgccctggtgatcgtt
cagggcaaggtgcagaacgaccgcttttcgggtgggctgcgcctgaacgccacgcaggtg
tgggatttggcggcagcccgggcacggtttgggcgctgctggtcggtgatgctgccagcc
ggcacgctgccgacagcgacgcaagcccgacaggccgtggccagcttggcgcagttgctg
caccagcatccgccccgcgtcgaggccaccgagttgggggatgtggcccaaggactgacg
gtgcgactccaattgcaccgggctggcgccgtggctgaactggagttgggcacccaaggg
cggttttggccttcggaagcagccttgagcgcttggcgcacctgggccccagaaggggcc
acgatgggcgtggtctacgaagggacgtga
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